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View Structure Prediction Details

Protein: gi|18410975, gi|...
Organism: Arabidopsis thaliana
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18410975, gi|....

Description E-value Query
Range
Subject
Range
gi|11282335, gi|... - gi|6735369|emb|CAB68190.1| putative protein [Arabidopsis thaliana], pir||T45672 hypothetical protein...
484.0 [0..25] [418..1]

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Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVKSQSFLF SVSKLFHQHQ QWRGMGAMTK VRLKWVKNKN LDHVIDTETD LKAACILKDA  60
   61 IKRSPTGFLT AKSVADWQKL LGLTVPVLRF LRRYPTLFHE FPHARYASLP CFKLTDTALM 120
  121 LDSQEEIIHQ SHEADTVERL CRVLMMMRSK TVSLRSLHSL KFDLGLPDNY EKTLVMKYPD 180
  181 HFCFVKASNG NPCLKLVKWR DEFAFSALQK RNEDN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [216-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVSGEESRYR EFKRGQSTLT FPMSFPRGYG AQKKVKAWMD EFQKLPYISP YDDPSNIDPE  60
   61 SDLMEKRAVA VLHELLSLTI HKKTKRNYLR SMRAELNIPH KFTRLFTRYP GIFYLSLKCK 120
  121 TTTVILKEGY RRGKLVDPHP LTRLRDKFYH VMRTGFLYRA RGLGMVSKEE LLLDRPEDDL 180
  181 EEEGSEEEEI VEGSELEEDS EAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle