YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36785611, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36785611, gi|....

Description	E-value	Query Range	Subject Range
gi\|68525847, gi\|... - gi\|94311280\|ref\|YP_584490.1\| excisionase/Xis, DNA-binding [Ralstonia metallidurans CH34], gi\|9335513... gi\|126194810, gi... - gi\|84326764\|ref\|ZP_00974789.1\| COG1910: Periplasmic molybdate-binding protein/domain [Pseudomonas ae... gi\|118049819, gi... - gi\|221064742\|ref\|ZP_03540847.1\| DNA binding domain protein, excisionase family [Comamonas testostero... gi\|121593669, gi... - gi\|121593669\|ref\|YP_985565.1\| DNA binding domain-containing protein [Acidovorax sp. JS42], gi\|120605... gi\|218771612, gi... - gi\|218891386\|ref\|YP_002440253.1\| DNA binding domain, excisionase family [Pseudomonas aeruginosa LESB... gi\|24461579 - gi\|24461579\|gb\|AAN62150.1\|AF440523_57 putative excisionase [Pseudomonas aeruginosa]	168.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITSTFSDIN LPAKRESEIA GKGLRELSAF LSTKLETQQI SIISDDHKSH QIEVPTSALT  60
   61 MLVQILSELA SGNAVQIVPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAELTTQEAA NILNVSRPHM VKLLEDGCLP FHKTGRHRRI RFADLMEYKK QRNTESMEAM  60
   61 KALANQAQEL GIY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.51
Match:	1j9iA
Description:	Terminase gpNU1 subunit domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.318084176063859	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: