YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|36785611, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 153 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36785611, gi|....

Description E-value Query
Range
Subject
Range
gi|68525847, gi|... - gi|94311280|ref|YP_584490.1| excisionase/Xis, DNA-binding [Ralstonia metallidurans CH34], gi|9335513...
gi|126194810, gi... - gi|84326764|ref|ZP_00974789.1| COG1910: Periplasmic molybdate-binding protein/domain [Pseudomonas ae...
gi|118049819, gi... - gi|221064742|ref|ZP_03540847.1| DNA binding domain protein, excisionase family [Comamonas testostero...
gi|121593669, gi... - gi|121593669|ref|YP_985565.1| DNA binding domain-containing protein [Acidovorax sp. JS42], gi|120605...
gi|218771612, gi... - gi|218891386|ref|YP_002440253.1| DNA binding domain, excisionase family [Pseudomonas aeruginosa LESB...
gi|24461579 - gi|24461579|gb|AAN62150.1|AF440523_57 putative excisionase [Pseudomonas aeruginosa]
168.0 [0..1] [152..1]

Back

Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITSTFSDIN LPAKRESEIA GKGLRELSAF LSTKLETQQI SIISDDHKSH QIEVPTSALT  60
   61 MLVQILSELA SGNAVQIVPV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAELTTQEAA NILNVSRPHM VKLLEDGCLP FHKTGRHRRI RFADLMEYKK QRNTESMEAM  60
   61 KALANQAQEL GIY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.51
Match: 1j9iA
Description: Terminase gpNU1 subunit domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.318084176063859 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle