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View Structure Prediction Details

Protein: KDSA_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 284 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KDSA_PHOLL.

Description E-value Query
Range
Subject
Range
KDSA_MANSM - 2-dehydro-3-deoxyphosphooctonate aldolase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=kdsA ...
324.0 [0..1] [284..1]

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Predicted Domain #1
Region A:
Residues: [1-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQKVVHIGD IKVANDLPFV LFGGMNVLES RDLAMSICEH YVTVTQKLGI PYVFKASFDK  60
   61 ANRSSIHSYR GPGLEEGMKI FQELKQTFGV KIITDVHESA QAQPVAEVVD VIQLPAFLAR 120
  121 QTDLVEAMAR TGAVINVKKP QFISPGQMGN IVDKFKEGGN DQVILCDRGS NFGYDNLVVD 180
  181 MLGFNVMAQA TGGHPVIFDV THSLQCRDPF GAASGGRRAQ VAELARAGMA VGIAGLFLEA 240
  241 HPDPANAMCD GPSALPLAKL EPFLSQMKAI DDVVKSFPQL DTSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.0
Match: 1d9eA
Description: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-deoxy-8-phosphooctulonate synthase activity 4.43037733440316 bayes_pls_golite062009
3-deoxy-7-phosphoheptulonate synthase activity 2.72022882819661 bayes_pls_golite062009
catalytic activity 2.67031204377352 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 0.840107349031025 bayes_pls_golite062009
lyase activity 0.740424046054758 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 0.643395146148785 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.490222900376021 bayes_pls_golite062009
transferase activity 0.464721888799972 bayes_pls_golite062009
aldehyde-lyase activity 0.351872954170322 bayes_pls_golite062009
transaldolase activity 0.337067552042715 bayes_pls_golite062009
oxo-acid-lyase activity 0.0484922693826344 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle