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View Structure Prediction Details

Protein: gi|37527052, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 194 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37527052, gi|....

Description E-value Query
Range
Subject
Range
gi|49612500, gi|... - gi|50121974|ref|YP_051141.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Pectobacterium atroseptic...
236.0 [0..1] [188..1]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLIVGLTG ASGAIYGIRL LQVLQPVEGI ETHLVISHSA RQTLALETDY SLRDVQALAD  60
   61 VVYDNRDIAA AISSGSFKTS GMVILPCSMK TLSGIVHSYT DGLVTRAADV VLKESRKLVL 120
  121 GVRETPLHLG HLRLMTQAAE IGAVIMPPVP AFYHQPQQIQ DIIDQTVNRV LDQFDIELPH 180
  181 DLFTRWQGAK SVEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.0
Match: 1sbzA
Description: Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity 5.88631349530005 bayes_pls_golite062009
carboxy-lyase activity 2.27469953971238 bayes_pls_golite062009
catalytic activity 1.88716391063227 bayes_pls_golite062009
carbon-carbon lyase activity 1.67751595868044 bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity 1.6488492075417 bayes_pls_golite062009
lyase activity 0.646446561158526 bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity 0.35505046579356 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle