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View Structure Prediction Details

Protein: gi|37525837, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525837, gi|....

Description E-value Query
Range
Subject
Range
gi|77975730, gi|... - gi|77975730|ref|ZP_00831264.1| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia f...
233.0 [0..8] [219..15]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAINIIGLF AFFFITSMAW GNNLPQAMEH YFQQIHRDNH YKVSVNIRTP EQQWPQCERP  60
   61 EIQPAIGGQN WGNLSLPVIC H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQRKFIQVAV SVTGNYLVTR RAISRNDVLS DKDFQVRRGL LERLPHDLVI NKNEIKNSIA  60
   61 IRNIPAGQAI THNMLRRPWV VRSGQSVAVI IQGNGFQIRN EGKAINNAAI SDKVRVRINS 120
  121 GHVITGQALE NGNVKIML

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.73
Match: 1wvoA
Description: Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle