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View Structure Prediction Details

Protein: gi|37525777, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525777, gi|....

Description E-value Query
Range
Subject
Range
FLHC_XENNE - Flagellar transcriptional regulator FlhC OS=Xenorhabdus nematophila GN=flhC PE=3 SV=1
364.0 [0..1] [193..1]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKSIVQEA KDIQLAMELI TLGARLQMLE SETQLSRGRL IKLYKELRGS PPPKGMLPFS  60
   61 TDWFMTWEQN IHSSMFYNAY RFLLKSGYCE GVEAVVKAYR LYLEQCPPAE GDAPVLALTR 120
  121 AWTLVRFVDS GMLQPSQCRT CGGTFITHAH QPVNSFVCSL CQPPSRAVKK RKLSSESADT 180
  181 NSQLLDGLAQ HAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.522879
Match: 2avuE
Description: Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 1.76728328288819 bayes_pls_golite062009
transcription activator activity 0.41227092363175 bayes_pls_golite062009
transcription repressor activity 0.334304405404029 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle