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View Structure Prediction Details

Protein: gi|36784287, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784287, gi|....

Description E-value Query
Range
Subject
Range
gi|54310267, gi|... - gi|54310267|ref|YP_131287.1| putative carbonic anhydrase [Photobacterium profundum SS9], gi|46914708...
272.0 [0..2] [217..1]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKIEELLA NNKQWSESVN EENPIFFKEL AKSQKPHFLW IGCSDSRVPA EKLIDAAPGD  60
   61 LFVHRNVANL VIHTDLNCLS VIQYAVDVLE VEHIIICGHY GCGGIEAAID GTELGLINNW 120
  121 LLHIRDLWYK HSSMLGELPP NERLNRLCEI NVVEQVYNLG HSTIMQAAWK RGQKVMIHGW 180
  181 VYGIHNGQLQ DLEVTADSRE KLELAYRQTI SKLTHKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.221849
Match: 1i6oA
Description: beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
carbonate dehydratase activity 2.96380803089124 bayes_pls_golite062009
catalytic activity 1.85658156053797 bayes_pls_golite062009
carbon-oxygen lyase activity 1.691366175135 bayes_pls_golite062009
hydro-lyase activity 1.65497918079842 bayes_pls_golite062009
lyase activity 1.62374861994341 bayes_pls_golite062009
binding 1.32962036184517 bayes_pls_golite062009
protein binding 0.132818074687599 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle