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View Structure Prediction Details

Protein: RPPH_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPPH_PHOLL.

Description E-value Query
Range
Subject
Range
RPPH_SHISS - RNA pyrophosphohydrolase OS=Shigella sonnei (strain Ss046) GN=rppH PE=3 SV=1
RPPH_SHIB3 - RNA pyrophosphohydrolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rppH PE=3 SV...
172.0 [0..1] [175..1]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDDDGYRPN VGIVICNRQG QVLWARRYGQ HSWQFPQGGI NPGESPEQAM YRELYEEVGL  60
   61 GRKDVRILAS TRNWLRYKLP KRLVRWDTRP VCIGQKQRWF LLQLLCNEED INVQHSNTPE 120
  121 FDGWRWVSYW YPVRQVVSFK RDVYRRVMKE FASVVMPMQE SVSLPRSSYS YRRKRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1f3yA
Description: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 1.86826130963189 bayes_pls_golite062009
catalytic activity 1.86119802438676 bayes_pls_golite062009
RNA pyrophosphohydrolase activity 0.681788425915311 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.544115189438 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.54377405132398 bayes_pls_golite062009
nucleic acid binding 0.468153646537656 bayes_pls_golite062009
binding 0.0581982566440131 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle