YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36783867, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36783867, gi|....

Description	E-value	Query Range	Subject Range
gi\|124531368, gi... - gi\|124531368\|ref\|ZP_01701678.1\| NusG antitermination factor [Escherichia coli B], gi\|124498582\|gb\|EA... gi\|218358575, gi... - gi\|218551034\|ref\|YP_002384825.1\| transcription antitermination protein NusG [Escherichia fergusonii ... gi\|218363305, gi... - gi\|218556536\|ref\|YP_002389450.1\| transcription antitermination protein NusG [Escherichia coli IAI1],... gi\|218697689, gi... - gi\|218697689\|ref\|YP_002405356.1\| transcription antitermination protein NusG [Escherichia coli 55989]... gi\|218372598, gi... - gi\|218702612\|ref\|YP_002410241.1\| transcription antitermination protein NusG [Escherichia coli IAI39]... gi\|218707600, gi... - gi\|218707600\|ref\|YP_002415119.1\| transcription antitermination protein NusG [Escherichia coli UMN026... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|157069130, gi... - gi\|75197846\|ref\|ZP_00707916.1\| COG0250: Transcription antiterminator [Escherichia coli HS], gi\|15716... gi\|73857953, gi\|... - gi\|74314476\|ref\|YP_312895.1\| transcription antitermination protein NusG [Shigella sonnei Ss046], gi\|... gi\|157154871, gi... - gi\|75188712\|ref\|ZP_00701979.1\| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi\|... gi\|89110057, gi\|... - gi\|89110057\|ref\|AP_003837.1\| transcription termination factor [Escherichia coli str. K-12 substr. W3... gi\|81242991, gi\|... - gi\|82778843\|ref\|YP_405192.1\| transcription antitermination protein NusG [Shigella dysenteriae Sd197]... gi\|254795980, gi... - gi\|254795980\|ref\|YP_003080817.1\| transcription termination factor [Escherichia coli O157:H7 str. TW1... gi\|81247735, gi\|... - gi\|82546324\|ref\|YP_410271.1\| transcription antitermination protein NusG [Shigella boydii Sb227], gi\|... gi\|254163923, gi... - gi\|254163923\|ref\|YP_003047031.1\| transcription antitermination protein NusG [Escherichia coli B str.... gi\|226838472, gi... - gi\|254039237\|ref\|ZP_04873286.1\| transcription termination/antitermination factor NusG [Escherichia s... gi\|254290673, gi... - gi\|254290673\|ref\|YP_003056421.1\| transcription antitermination protein NusG [Escherichia coli BL21(D... gi\|242379512, gi... - gi\|251787239\|ref\|YP_003001543.1\| hypothetical protein B21_03811 [Escherichia coli BL21], gi\|24237951... gi\|238903038, gi... - gi\|238903038\|ref\|YP_002928834.1\| transcription termination factor [Escherichia coli BW2952], gi\|2388... NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2 gi\|187427213, gi... - gi\|187730221\|ref\|YP_001882667.1\| transcription termination/antitermination factor NusG [Shigella boy... NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli gi\|15834159, gi\|... - gi\|15834159\|ref\|NP_312932.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 st... gi\|188487728, gi... - gi\|188492529\|ref\|ZP_02999799.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|24115267, gi\|... - gi\|24115267\|ref\|NP_709777.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 3... gi\|110807832, gi... - gi\|110807832\|ref\|YP_691352.1\| transcription antitermination protein NusG [Shigella flexneri 5 str. 8... gi\|195939607 - gi\|195939607\|ref\|ZP_03084989.1\| transcription antitermination protein NusG [Escherichia coli O157:H7... gi\|30042995, gi\|... - gi\|30064735\|ref\|NP_838906.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 2... gi\|208812131, gi... - gi\|208812131\|ref\|ZP_03253460.1\| transcription termination/antitermination factor NusG [Escherichia c... NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2 gi\|208739955, gi... - gi\|208819832\|ref\|ZP_03260152.1\| transcription termination/antitermination factor NusG [Escherichia c... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|209399471, gi... - gi\|209399471\|ref\|YP_002273498.1\| transcription termination/antitermination factor NusG [Escherichia ... gi\|15804572, gi\|... - gi\|15804572\|ref\|NP_290613.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 ED... gi\|209914719, gi... - gi\|209921460\|ref\|YP_002295544.1\| transcription antitermination protein NusG [Escherichia coli SE11],... gi\|217321655, gi... - gi\|217325434\|ref\|ZP_03441518.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|189354220, gi... - gi\|189354220\|gb\|EDU72639.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189359775, gi... - gi\|189359775\|gb\|EDU78194.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189001643, gi... - gi\|189001643\|gb\|EDU70629.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189370168, gi... - gi\|189370168\|gb\|EDU88584.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|170022015, gi... - gi\|170022015\|ref\|YP_001726969.1\| transcription antitermination protein NusG [Escherichia coli ATCC 8... gi\|170083442, gi... - gi\|170083442\|ref\|YP_001732762.1\| transcription termination factor [Escherichia coli str. K-12 substr... gi\|170682823, gi... - gi\|170682823\|ref\|YP_001746366.1\| transcription termination/antitermination factor NusG [Escherichia ...	247.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSPKKRWY VIQAFSGFEG RVAQSLREHI KLHDMEDSFG EVMVPTEEVV EIRSGQRRKS  60
   61 ERKFFPGYVL VQMIMNDATW HLVRSVPRVM GFIGGTSDRP APISDKEVDA IMNRLQQVGD 120
  121 KPRPKTLFEP GEMVRVSDGP FADFNGVVEE VDYEKSRLKV SVSIFGRATP VELDFSQVEK 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.3828495299519	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
structural constituent of ribosome	2.40236111142017	bayes_pls_golite062009
structural molecule activity	2.11748533169546	bayes_pls_golite062009
nucleic acid binding	0.761013355804059	bayes_pls_golite062009
binding	0.302568764609847	bayes_pls_golite062009
DNA binding	0.302556727687398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: