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View Structure Prediction Details

Protein: gi|51971413, gi|...
Organism: Arabidopsis thaliana
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51971413, gi|....

Description E-value Query
Range
Subject
Range
gi|26451899, gi|... - gi|51970392|dbj|BAD43888.1| unknown protein [Arabidopsis thaliana], gi|26451899|dbj|BAC43042.1| unkn...
301.0 [0..1] [387..1]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDAAIRTVV EAIHSSPTQA VVYLCGGASL ALGWLMSVPG ASNTLLESVV PYSRVSMVQL  60
   61 LGRVPSQHCS QALAKEMALL AYNRALKLSK PGYPVLGVGF TGSLVTSRPK RGDHRFFLSM 120
  121 RASDRILESS VTLTKNLRSR EEEDKVSSCA LIQAMAKACQ VSGTLDSGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.0
Match: 2a9sA
Description: The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [170-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESEVPYESE THFTEEQELE QLINGHLCCK IYPFSGEAHG SDEDRKIILP GSFNPLHEGH  60
   61 LKLLEVAMSV CGGGYPCFEI SAINADKPPL TIAQIKDRVK QFEVVGKTII VSNQPYFYKK 120
  121 AELFPGSSFV IGADTAARLV NPKYYEGSIK RMLEILGDCK RTGCTFLVGG RNVDGVFKVL 180
  181 EDVDIPEEII DMFISIPADI FRMDISSTEI RKKQGGGTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.0
Match: 1kamA
Description: Nicotinamide mononucleotide (NMN) adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.84668360172717 bayes_pls_golite062009
ligase activity 0.41353894226697 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.1911539125531 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.1911539125531 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.178548924377401 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle