YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79442300, gi\|...
Organism:	Arabidopsis thaliana
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79442300, gi|....

Description	E-value	Query Range	Subject Range
gi\|42572645 - gi\|42572645\|ref\|NP_974418.1\| tatD-related deoxyribonuclease family protein [Arabidopsis thaliana]	311.0	[0..1]	[320..1]
gi\|115470655, gi... - gi\|51963270\|ref\|XP_506167.1\| PREDICTED P0455F03.23 gene product [Oryza sativa (japonica cultivar-gro...	306.0	[0..5]	[317..7]
gi\|95133324, gi\|... - gi\|95930672\|ref\|ZP_01313406.1\| TatD-related deoxyribonuclease [Desulfuromonas acetoxidans DSM 684], ...	304.0	[0..1]	[309..1]
gi\|52078534, gi\|... - gi\|52783896\|ref\|YP_089725.1\| YabD [Bacillus licheniformis ATCC 14580], gi\|52346398\|gb\|AAU39032.1\| Ya...	300.0	[0..5]	[302..1]
gi\|89084133, gi\|... - gi\|89101165\|ref\|ZP_01173998.1\| YabD [Bacillus sp. NRRL B-14911], gi\|89084133\|gb\|EAR63301.1\| YabD [Ba...	299.0	[0..5]	[303..1]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	295.0	[0..5]	[303..1]
TATD1_MOUSE - Putative deoxyribonuclease TATDN1 OS=Mus musculus GN=Tatdn1 PE=1 SV=1	295.0	[0..1]	[301..1]
TATDN1 - TatD DNase domain containing 1	295.0	[0..1]	[303..1]
gi\|57095336 - gi\|57095336\|ref\|XP_532325.1\| PREDICTED: similar to TatD DNase domain containing 1 [Canis familiaris]	294.0	[0..1]	[301..1]
TATD1_BOVIN - Putative deoxyribonuclease TATDN1 OS=Bos taurus GN=TATDN1 PE=2 SV=1	294.0	[0..1]	[302..1]

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Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKMIDIA VNFTDGMFKG LYHGKNCHVP DIATVLNRAW SAGVDRIIVT GGSLEESREA  60
   61 LAIAETDGRL FCTVGVHPTR CNEFEESGDP EKHYQALFSL AKEGMQKGKV VAIGECGLDY 120
  121 DRLQFCSVDI QKKYFEKQFE LAYATKLPMF LHMRAAAEDF CEIVERNKNR FTGGVAHSFT 180
  181 GSASDRDKLL SFDKMYLGVN GCSLKTAENL EVMKGIPVER MMIETDSPYC DIKNTHAGIK 240
  241 FVKSTWPSKK KEKYDQESLV KGRNEPCLVR QVLEVVAGYK GLGDLNQVSS TLYHNTCRVF 300
  301 FPQDLDSAAD ALLSGHHETD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	3e2vA
Description:	No description for 3e2vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits