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View Structure Prediction Details

Protein: HKT1_ARATH
Organism: Arabidopsis thaliana
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HKT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|49646900 - gi|49646900|emb|CAG83287.1| YALI0B17864p [Yarrowia lipolytica]
gi|49646900, gi|... - gi|50547129|ref|XP_501034.1| YALI0B17864p [Yarrowia lipolytica], gi|49646900|emb|CAG83287.1| unnamed...
328.0 [0..114] [505..405]

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Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS  60
   61 VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL NLYVSYFTKF VFPHNKIRHI 120
  121 LGSYNS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2q67A
Description: No description for 2q67A was found.

Predicted Domain #2
Region A:
Residues: [127-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSIEDRCDV ETVTDYREGL IKIDERASKC LYSVVLSYHL VTNLVGSVLL LVYVNFVKTA  60
   61 RDVLSSKEIS PLTFSVFTTV STFA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [211-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [271-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ LLFFCAFEWT SESLEGMSSY EKLVGSLFQV  60
   61 VNSRHTGETI VDLST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [346-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSPAILVLFI LMMYLPPYTL FMPLTEQKTI EKEGGDDDSE NGKKVKKSGL IVSQLSFLTI  60
   61 CIFLISITER QNLQRDPINF NVLNITLEVI SAYGNVGFTT GYSCERRVDI SDGGCKDASY 120
  121 GFAGRWSPMG KFVLIIVMFY GRFKQFTAKS GRAWILYPSS S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle