YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HKT1_ARATH
Organism: Arabidopsis thaliana
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HKT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|49646900 - gi|49646900|emb|CAG83287.1| YALI0B17864p [Yarrowia lipolytica]
gi|49646900, gi|... - gi|50547129|ref|XP_501034.1| YALI0B17864p [Yarrowia lipolytica], gi|49646900|emb|CAG83287.1| unnamed...
328.0 [0..114] [505..405]

Back

Predicted Domain #1
Region A:
Residues: [1-126]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRVVAKIAK IRSQLTKLRS LFFLYFIYFL FFSFLGFLAL KITKPRTTSR PHDFDLFFTS  60
   61 VSAITVSSMS TVDMEVFSNT QLIFLTILMF LGGEIFTSFL NLYVSYFTKF VFPHNKIRHI 120
  121 LGSYNS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2q67A
Description: No description for 2q67A was found.

Predicted Domain #2
Region A:
Residues: [127-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSIEDRCDV ETVTDYREGL IKIDERASKC LYSVVLSYHL VTNLVGSVLL LVYVNFVKTA  60
   61 RDVLSSKEIS PLTFSVFTTV STFA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [211-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCGFVPTNEN MIIFRKNSGL IWLLIPQVLM GNTLFPCFLV LLIWGLYKIT KRDEYGYILK  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [271-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHNKMGYSHL LSVRLCVLLG VTVLGFLIIQ LLFFCAFEWT SESLEGMSSY EKLVGSLFQV  60
   61 VNSRHTGETI VDLST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [346-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSPAILVLFI LMMYLPPYTL FMPLTEQKTI EKEGGDDDSE NGKKVKKSGL IVSQLSFLTI  60
   61 CIFLISITER QNLQRDPINF NVLNITLEVI SAYGNVGFTT GYSCERRVDI SDGGCKDASY 120
  121 GFAGRWSPMG KFVLIIVMFY GRFKQFTAKS GRAWILYPSS S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle