YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-17
Organism:	Caenorhabditis elegans
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-17.

Description	E-value	Query Range	Subject Range
gi\|109068818 - gi\|109068818\|ref\|XP_001096894.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit isoform 1...	124.0	[0..2]	[81..35]
gi\|114616687 - gi\|114616687\|ref\|XP_519473.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	119.0	[0..2]	[81..35]
gi\|119600427, gi... - gi\|21758361\|dbj\|BAC05292.1\| unnamed protein product [Homo sapiens], gi\|119600427\|gb\|EAW80021.1\| ATPa...	119.0	[0..2]	[81..35]
gi\|73978959 - gi\|73978959\|ref\|XP_539905.2\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit [Canis famili...	115.0	[0..2]	[77..35]
gi\|58384490, gi\|... - gi\|58384490\|ref\|XP_313344.2\| ENSANGP00000011861 [Anopheles gambiae str. PEST], gi\|55241061\|gb\|EAA088...	115.0	[0..3]	[79..45]
gi\|94468560 - gi\|94468560\|gb\|ABF18129.1\| vacuolar ATPase M9 [Aedes aegypti]	110.0	[0..3]	[79..4]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILIPLVSV SAFWAIIGFG GPWIVPKGPN RGIIQLMIIM TAVCCWMFWI MVFLHQLNPL  60
   61 IGPQINVKTI RWISEKWGDA PNVINN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.09691
Match:	PF05493.4
Description:	No description for PF05493.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits