| Protein: | CE37535 |
| Organism: | Caenorhabditis elegans |
| Length: | 473 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37535.
| Description | E-value | Query Range |
Subject Range |
|
|
271.0 | [0..23] | [470..66] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MQITSALTQN KMDPINGNLT STAPVEPLSL TAAEQVGGAF CHQFYITVSE NRKAITKFYG 60
61 HESKFYLDDQ VVTGSQEIVK LYNHLPETTH FKIQSIKGYP TPHKQGVIIN VIGTVNLRPF 120
121 LQSFLLGQQG QKKYYVESDA FQ
|
| Detection Method: |  |
| Confidence: | 32.30103 |
| Match: | 1zo2A |
| Description: | Structure of nuclear transport factor 2 (Ntf2) from Cryptosporidium parvum |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.986006126760401 | bayes_pls_golite062009 |
| protein binding | 0.524130754919636 | bayes_pls_golite062009 |
|
Region A: Residues: [143-473] |
1 11 21 31 41 51
| | | | | |
1 YIDKFFVANT EKEKTTSSTG HNGHASGANG KDSKSSKTEQ PKEQSKPAPP KQQTPKKAED 60
61 RIVKQDTPKS VEKEVAKTPQ KPQLAQQPPQ QRAPVPEPVQ EQPKVQKTWA NLVGGGGKSQ 120
121 PPQQQSYGQG QQIHQQTQMH HMQPSMHQQQ QGSHAPLYQQ QRQSHPANEL RQAQESSDAN 180
181 LNERKIYLGG ITREIVPSNT AQAESEIKQV FYKYGEIEEV RMPRKVLDSP NDTSKHAFAF 240
241 ITMRNKAGVK AIFEAATKDE QGVWKLPLKL DAFGFDGHAQ ISEQRDQPQG GGFRGGRGGF 300
301 QPRGGQFFRR GGSGGAPRGG MRSGFQNAGQ N
|
| Detection Method: | |
| Confidence: | 35.0 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.863532182990129 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
| mRNA binding | 0.0677652340577004 | bayes_pls_golite062009 |
