YRC Public Data Repository - Protein Structure Prediction

Protein:	PNSL4_ARATH
Organism:	Arabidopsis thaliana
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNSL4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114772590, gi... - gi\|114772590\|ref\|ZP_01449954.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [alpha... gi\|114772590 - gi\|114772590\|ref\|ZP_01449954.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [alpha... gi\|221134684 - gi\|221134684\|ref\|ZP_03560987.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [Glaci...	172.0	[0..1]	[210..1]
gi\|88773309, gi\|... - gi\|88795323\|ref\|ZP_01111021.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [Altero...	171.0	[0..9]	[210..10]
gi\|90407453, gi\|... - gi\|90407453\|ref\|ZP_01215637.1\| peptidyl-prolyl cis-trans isomerase FklB [Psychromonas sp. CNPT3], gi...	171.0	[0..27]	[211..56]
gi\|118649112, gi... - gi\|118713573\|ref\|ZP_01566138.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia MC0-3], gi\|118649... gi\|67656803, gi\|... - gi\|67656803\|ref\|ZP_00454184.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia AU 1054], gi\|67095... gi\|67667692, gi\|... - gi\|67667692\|ref\|ZP_00464906.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia HI2424], gi\|670987...	169.0	[0..89]	[210..109]
gi\|2231680 - gi\|2231680\|gb\|AAC45668.1\| macrophage infectivity potentiator [Legionella adelaidensis]	168.0	[0..27]	[212..55]
gi\|71282635, gi\|... - gi\|71282635\|ref\|YP_270136.1\| FKBP-type peptidyl-prolyl cis-trans isomerase FklB [Colwellia psychrery...	168.0	[0..27]	[211..42]
gi\|22294826, gi\|... - gi\|22298646\|ref\|NP_681893.1\| FKBP-type peptidyl-prolyl cis-trans isomerase [Thermosynechococcus elon...	168.0	[0..87]	[210..49]
gi\|76791664, gi\|... - gi\|76791664\|ref\|ZP_00774169.1\| FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomer...	168.0	[0..27]	[210..34]
gi\|2231706 - gi\|2231706\|gb\|AAC45686.1\| macrophage infectivity potentiator [Legionella brunensis]	168.0	[0..27]	[214..70]
gi\|2231724 - gi\|2231724\|gb\|AAC45695.1\| macrophage infectivity potentiator [Legionella lansingensis]	168.0	[0..27]	[214..70]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA  60
   61 SSILSLTPLD ADATRIDYYA TV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDPLCEYSYA KSGLGFCDLD VGFGDEAPRG VLVNIHYTAR FADGTLFDSS YKRARPLTMR  60
   61 IGVGKVIRGL DQGILGGEGV PPMRVGGKRK LQIPPKLAYG PEPAGCFSGD CNIPGNATLL 120
  121 YDINFVEIYP GSNTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1u79A
Description:	Crystal structure of AtFKBP13
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits