YRC Public Data Repository - Protein Structure Prediction

Protein:	PNSL4_ARATH
Organism:	Arabidopsis thaliana
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNSL4_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114772590, gi... - gi\|114772590\|ref\|ZP_01449954.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [alpha... gi\|114772590 - gi\|114772590\|ref\|ZP_01449954.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [alpha... gi\|221134684 - gi\|221134684\|ref\|ZP_03560987.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [Glaci...	172.0	[0..1]	[210..1]
gi\|88773309, gi\|... - gi\|88795323\|ref\|ZP_01111021.1\| FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) [Altero...	171.0	[0..9]	[210..10]
gi\|90407453, gi\|... - gi\|90407453\|ref\|ZP_01215637.1\| peptidyl-prolyl cis-trans isomerase FklB [Psychromonas sp. CNPT3], gi...	171.0	[0..27]	[211..56]
gi\|118649112, gi... - gi\|118713573\|ref\|ZP_01566138.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia MC0-3], gi\|118649... gi\|67656803, gi\|... - gi\|67656803\|ref\|ZP_00454184.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia AU 1054], gi\|67095... gi\|67667692, gi\|... - gi\|67667692\|ref\|ZP_00464906.1\| Peptidylprolyl isomerase [Burkholderia cenocepacia HI2424], gi\|670987...	169.0	[0..89]	[210..109]
gi\|2231680 - gi\|2231680\|gb\|AAC45668.1\| macrophage infectivity potentiator [Legionella adelaidensis]	168.0	[0..27]	[212..55]
gi\|71282635, gi\|... - gi\|71282635\|ref\|YP_270136.1\| FKBP-type peptidyl-prolyl cis-trans isomerase FklB [Colwellia psychrery...	168.0	[0..27]	[211..42]
gi\|22294826, gi\|... - gi\|22298646\|ref\|NP_681893.1\| FKBP-type peptidyl-prolyl cis-trans isomerase [Thermosynechococcus elon...	168.0	[0..87]	[210..49]
gi\|76791664, gi\|... - gi\|76791664\|ref\|ZP_00774169.1\| FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomer...	168.0	[0..27]	[210..34]
gi\|2231706 - gi\|2231706\|gb\|AAC45686.1\| macrophage infectivity potentiator [Legionella brunensis]	168.0	[0..27]	[214..70]
gi\|2231724 - gi\|2231724\|gb\|AAC45695.1\| macrophage infectivity potentiator [Legionella lansingensis]	168.0	[0..27]	[214..70]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA  60
   61 SSILSLTPLD ADATRIDYYA TV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.701	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.697	d.50.5	Description not found.
View	Download	0.695	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.691	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.633	a.239.1	Description not found.
View	Download	0.621	d.52.4	YhbC-like, N-terminal domain
View	Download	0.612	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.451	d.16.1	FAD-linked reductases, C-terminal domain

Predicted Domain #2

Region A:
Residues: [83-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDPLCEYSYA KSGLGFCDLD VGFGDEAPRG VLVNIHYTAR FADGTLFDSS YKRARPLTMR  60
   61 IGVGKVIRGL DQGILGGEGV PPMRVGGKRK LQIPPKLAYG PEPAGCFSGD CNIPGNATLL 120
  121 YDINFVEIYP GSNTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1u79A
Description:	Crystal structure of AtFKBP13
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits