| Protein: | gi|7486811, gi|4... |
| Organism: | Arabidopsis thaliana |
| Length: | 748 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7486811, gi|4....
| Description | E-value | Query Range |
Subject Range |
|
|
445.0 | [0..1] | [748..1] |
|
|
328.0 | [0..1] | [720..22] |
|
|
310.0 | [0..2] | [742..68] |
|
|
239.0 | [0..174] | [600..17] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MNRTVVSGAV ESSFSLTDAV GTEALNMQRS SGINNNMRIP TSPMSFSSNS VNIPGSLVLD 60
61 GSAASMQHLP QQQQQQLLQQ QTGQGSVPMR ENSYSHVDKK PRLEVKQEDM LQQQILQQLI 120
121 QRQDPTGRNP QMQALLQQQR LRQHQQMLQS MSPSQRLQLQ QQQQLRQQLQ QQGTQQIPPN 180
181 VRPYEVGVCA RKLMMYLYHL QQRPAENCIT YWRKFVAEYF SPRAKQRLCL SQYESAGHHA 240
241 LGMFPQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [247-352] |
1 11 21 31 41 51
| | | | | |
1 AAPDMWQCDL CGTKSGKGFE ATFDVLARLI EIKFASGIID ELLYLDHPRE NRFPNGLMML 60
61 EYRKAVQETV HEQFRVVREG HLRIIFSQDL KILSWEFCAR RHEELL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.727 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.727 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.701 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.701 | a.112.1 | Description not found. |
| View | Download | 0.663 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.648 | a.25.1 | Ferritin-like |
| View | Download | 0.648 | a.25.1 | Ferritin-like |
| View | Download | 0.611 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.608 | a.25.1 | Ferritin-like |
| View | Download | 0.595 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
|
Region A: Residues: [353-629] |
1 11 21 31 41 51
| | | | | |
1 LRRLIAPQVN QLLQVAQKCQ STISESGSEG VSQQDLQSNS NMVLGAGRQL AKFMELQSLN 60
61 DLGYPKRYIR TLQISEVVKS MKDLMNFTGE QKIGPIEGLK RLLEQTVTVK LQKQKMQEME 120
121 QFGNNGAING PVQAQMVLTS GTMNGSTGNN TNNHHQIVGR GAMSGPAEGQ MVISSGTVSG 180
181 ATANNNSNNH NQIVGRGAMN GSAQAAAALT NYQSMLMRQN AMNNPNSNTG KQEGFSSQNP 240
241 TPNSNQSPSS SSQQRHNLVT GGFPNSPQMQ QQQRTMN
|
| Detection Method: | |
| Confidence: | 6.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [630-748] |
1 11 21 31 41 51
| | | | | |
1 GPTNILPQNH PHQLQSPHSH GNTPEQQMLH QLLQEMSENG GSVQQQQAFS GQSGSNSNAE 60
61 RNTTASTSNI SGGGRAPSRN NSFKAASNNN LHFSEDISIT DHDFSEDGFF NNNDIYGGL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
