YRC Public Data Repository - Protein Structure Prediction

Protein:	FPF1_ARATH
Organism:	Arabidopsis thaliana
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FPF1_ARATH.

Description	E-value	Query Range	Subject Range
FPF1_SINAL - Flowering-promoting factor 1 OS=Sinapis alba GN=FPF1 PE=2 SV=1	211.0	[0..1]	[110..1]
gi\|11357356, gi\|... - gi\|7671439\|emb\|CAB89379.1\| putative protein [Arabidopsis thaliana], pir\|\|T49975 hypothetical protein...	198.0	[0..1]	[105..1]
gi\|125525248 - gi\|125525248\|gb\|EAY73362.1\| hypothetical protein OsI_01240 [Oryza sativa Indica Group] FLP1_ORYSJ - Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica GN=RAA1 PE=1 SV=1	184.0	[0..1]	[109..1]
gi\|40949983 - gi\|40949983\|gb\|AAR97604.1\| flowering promoting factor-like 1 [Nicotiana tabacum]	178.0	[0..1]	[108..1]
gi\|125547578, gi... - gi\|125547578\|gb\|EAY93400.1\| hypothetical protein OsI_15197 [Oryza sativa Indica Group], gi\|116308921...	165.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVWVFKNG VIRLVENPNQ SGSDTQNRRK VMVYLPTGEV VSSYSTLEQI LQSLGWERYF  60
   61 GGGDTDLLQF HKRSSIDLIS LPRDFTKFNS VYMYDIVVKN PNYFHVRDSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits