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View Structure Prediction Details

Protein: RNZN_ARATH
Organism: Arabidopsis thaliana
Length: 280 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNZN_ARATH.

Description E-value Query
Range
Subject
Range
RNZN_ARATH - (Q8LGU7) Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNA 3 endonuclease) (Zinc phosphodiestera...
170.0 [0..1] [280..1]

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Predicted Domain #1
Region A:
Residues: [1-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKKAMQIE GYPIEGLSIG GHETCIIFPS LRIAFDIGRC PHRAISQDFL FISHSHMDHI  60
   61 GGLPMYVATR GLYKMKPPTI IVPASIKETV ESLFEVHRKL DSSELKHNLV GLDIGEEFII 120
  121 RKDLKVKAFK TFHVIQSQGY VVYSTKYKLK KEYIGLSGNE IKNLKVSGVE ITDSIITPEV 180
  181 AFTGDTTSDF VVDETNADAL KAKVLVMEST FLDDSVSVEH ARDYGHIHIS EIVNHAEKFE 240
  241 NKAILLIHFS ARYTVKEIED AVSALPPPLE GRVFALTQGF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1y44A
Description: Crystal structure of RNase Z
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.411342240547828 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle