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View Structure Prediction Details

Protein: gi|20453313, gi|...
Organism: Arabidopsis thaliana
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20453313, gi|....

Description E-value Query
Range
Subject
Range
gi|121603685, gi... - gi|84709875|ref|ZP_01018810.1| Modification methylase HemK [Polaromonas naphthalenivorans CJ2], gi|8...
159.0 [0..5] [237..51]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQGLEESN PMDLSKHPSG IVPTPHSQVI YKMPPRIAAI RLVSSHREVY EPCDDSFALV  60
   61 DALLADRTNL IEHNPKICME IGCGSGYVIT SLILLLQNEV PGVHYLAIDT NPIATRVTKE 120
  121 TLEAHGVNAD VICADLATGL EKRLAGSVDV IVVNPPYVPT PEYEVGMEGI ASAWAGGENG 180
  181 RTVIDKILPV VDLLLSEKGW FYLVTLTSNF PAEICLMMRK KGYASRIVVQ RSTEEENLVI 240
  241 LKFWRDKDEE SQDKETSSSS FVSQFSKSLS SLMEKQWR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.154902
Match: 1t43A
Description: Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 1.77671966857605 bayes_pls_golite062009
transcription regulator activity 1.61435611638306 bayes_pls_golite062009
DNA binding 1.53375495589674 bayes_pls_golite062009
nucleic acid binding 1.31440474302645 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
binding 0.976078016260105 bayes_pls_golite062009
protein binding 0.871386560666009 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.837368219068434 bayes_pls_golite062009
N-methyltransferase activity 0.69697643153076 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.644010137949015 bayes_pls_golite062009
methyltransferase activity 0.635463629299812 bayes_pls_golite062009
protein methyltransferase activity 0.57386401278889 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle