YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30690286, gi\|...
Organism:	Arabidopsis thaliana
Length:	739 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30690286, gi|....

Description	E-value	Query Range	Subject Range
MSSP2_ARATH - Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=1 SV=2	371.0	[0..14]	[739..14]
gi\|63334145, gi\|... - gi\|63334145\|gb\|AAY40466.1\| putative hexose transporter [Vitis vinifera], gi\|225457626\|ref\|XP_0022744...	356.0	[0..14]	[739..14]
gi\|115445159, gi... - gi\|50906569\|ref\|XP_464773.1\| putative hexose transporter [Oryza sativa (japonica cultivar-group)], g...	353.0	[0..1]	[737..1]
gi\|92868426 - gi\|92868426\|gb\|ABE78431.1\| Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medic...	350.0	[0..14]	[738..14]
gi\|31505504 - gi\|31505504\|gb\|AAO37640.1\| putative sugar transporter type 2a [Saccharum hybrid cultivar]	346.0	[0..1]	[732..1]
gi\|26986186 - gi\|26986186\|emb\|CAD58958.1\| hexose transporter [Hordeum vulgare subsp. vulgare]	338.0	[0..4]	[738..5]

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Predicted Domain #1

Region A:
Residues: [1-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT  60
   61 TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL LGRLLDGFGV GLVVTLVPIY 120
  121 ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL 180
  181 TVFFLPESPR WLVSKGRMLE AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP 240
  241 ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL 300
  301 VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD 360
  361 SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG AQGEGAGSMG IGGGWQVAWK 420
  421 WTEREDESGQ KEGGFKRIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [440-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHQEGFPGSR RGSIVSLPGG DGTGEADFVQ ASALVSQPAL YSKDLLKEHT IGPAMVHPSE  60
   61 TTKGSIWHDL HDPGVKRALV VGVGLQILQQ FSGINGVLYY TPQILEQAGV GILLSNMG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [558-739]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISSSSASLLI SALTTFVMLP AIAVAMRLMD LSGRRTLLLT TIPILIASLL VLVISNLVHM  60
   61 NSIVHAVLST VSVVLYFCFF VMGFGPAPNI LCSEIFPTRV RGICIAICAL TFWICDIIVT 120
  121 YSLPVLLKSI GLAGVFGMYA IVCCISWVFV FIKVPETKGM PLEVITEFFS VGARQAEAAK 180
  181 NE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1pv6A
Description:	Crystal structure of lactose permease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits