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View Structure Prediction Details

Protein: CTBP_ARATH
Organism: Arabidopsis thaliana
Length: 636 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTBP_ARATH.

Description E-value Query
Range
Subject
Range
gi|78044181, gi|... - gi|78044181|ref|YP_361480.1| D-3-phosphoglycerate dehydrogenase [Carboxydothermus hydrogenoformans Z...
509.0 [0..21] [564..1]

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Predicted Domain #1
Region A:
Residues: [1-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIRSSATM PHRDQPSPAS PHVVTLNCIE DCALEQDSLA GVAGVEYVPL SRIADGKIES  60
   61 ATAVLLHSLA YLPRAAQRRL RPHQLILCLG SADRAVDSTL AADLGLRLVH VDTSRAEEIA 120
  121 DTVMALILGL LRRTHLLSRH ALSASGWLGS LQPLCRGMRR CRGMVLGIVG RSVSARYLAS 180
  181 RSLAFKMSVL YFDVPEGDEE RIRPSRFPRA ARRMDTLNDL LAASDVISLH CALTNDTVQI 240
  241 LNAECLQHIK PGAFLVNTGS CQLLDDCAVK QLLIDGTIAG CALDGAEGPQ WMEAWVKEMP 300
  301 NVLILPRSAD YSEEVWMEIR EKAISILHSF FLDGVIPSNT VSDEEVEESE ASEEEEQSPS 360
  361 KHEKLAIVES TSRQQGESTL TSTEIVRREA SELKESLSPG QQHVSQNTAV KPEGRRSRSG 420
  421 KKAKKRHSQQ KYMQKTDGSS GLNEESTSRR DDIAMSDTEE VLSSSSRCAS PEDSRSRKTP 480
  481 LEVMQESSPN QLVMSSKKFI GKSSELLKDG YVVALYAKDL SGLHVSRQRT KNGGWFLDTL 540
  541 SNVSKRDPAA QFIIAYRNKD TV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 111.0
Match: 1ygyA
Description: Crystal Structure of D-3-Phosphoglycerate dehydrogenase From Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [563-636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLRSFAAGGK LLQINRRMEF VFASHSFDVW ESWSLEGSLD ECRLVNCRNS SAVLDVRVEI  60
   61 LAMVGDDGIT RWID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle