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View Structure Prediction Details

Protein: RRP8_ARATH
Organism: Arabidopsis thaliana
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP8_ARATH.

Description E-value Query
Range
Subject
Range
gi|9758079 - gi|9758079|dbj|BAB08523.1| unnamed protein product [Arabidopsis thaliana]
214.0 [0..1] [287..1]

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Predicted Domain #1
Region A:
Residues: [1-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEENKTSR NRKRKRQRNP KPSKEEPIET TPKNQNEKKN QRDTKNQQHG GSSAPSKRPK  60
   61 PSNFLDALRE RLSGGQFRML NEKLYTCSGK EALDYFKEDP QMFDMYHTGY QQQMSNWPEL 120
  121 PVNSIINWLL SNSSSLVVAD FGCGDARIAK SVKNKVFSFD LVSKNPSVIA CDMSNTSLES 180
  181 SSVDVAVFCL SLMGTNYSSY IKEAHRVLRP SGMLLIAEVK SRFDPNNGGA DPKDFVKAVC 240
  241 DLGFTSVLKD FSNKMFILFH FKKKEQMNSN QKIIKWPELK ACLYKRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2fk7A
Description: Crystal structure of Hma (MmaA4) from Mycobacterium tuberculosis, apo-form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle