YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145328250, gi...
Organism:	Arabidopsis thaliana
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145328250, gi....

Description	E-value	Query Range	Subject Range
gi\|3184282, gi\|7... - pir\|\|T00606 hypothetical protein At2g02570 [imported] - Arabidopsis thaliana, gi\|3184282\|gb\|AAC18929...	283.0	[0..1]	[300..1]
gi\|42408381, gi\|... - gi\|50940399\|ref\|XP_479727.1\| putative survival motor neuron domain containing 1; splicing factor 30,... gi\|125559900 - gi\|125559900\|gb\|EAZ05348.1\| hypothetical protein OsI_27552 [Oryza sativa Indica Group]	256.0	[0..5]	[300..1]
gi\|50749781 - gi\|50749781\|ref\|XP_421753.1\| PREDICTED: similar to Survival of motor neuron-related splicing factor ...	193.0	[0..10]	[286..300]
gi\|74214419 - gi\|74214419\|dbj\|BAE40445.1\| unnamed protein product [Mus musculus]	175.0	[0..10]	[287..2]
SPF30_DANRE - Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1	175.0	[0..10]	[287..2]
gi\|32407110, gi\|... - gi\|32407110\|ref\|XP_324151.1\| predicted protein [Neurospora crassa], gi\|28921911\|gb\|EAA31184.1\| predi... gi\|85097308 - gi\|85097308\|ref\|XP_960420.1\| hypothetical protein [Neurospora crassa OR74A]	171.0	[0..10]	[296..2]
gi\|55732755 - gi\|55732755\|emb\|CAH93075.1\| hypothetical protein [Pongo abelii] gi\|73998555 - gi\|73998555\|ref\|XP_535011.2\| PREDICTED: similar to Survival of motor neuron-related splicing factor ... SPF30_PONAB - Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1 gi\|149689676 - gi\|149689676\|ref\|XP_001496943.1\| PREDICTED: similar to 30kDa splicing factor; SPF 30 [Equus caballus... gi\|114632789, gi... - gi\|114632789\|ref\|XP_001142419.1\| PREDICTED: hypothetical protein LOC450730 isoform 1 [Pan troglodyte... gi\|109090545 - gi\|109090545\|ref\|XP_001085864.1\| PREDICTED: survival motor neuron domain containing 1 [Macaca mulatt... ENSCJAT00000036580 - null	170.0	[0..10]	[287..2]
SPF30_BOVIN - Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1	170.0	[0..11]	[287..3]
SMNDC1 - survival motor neuron domain containing 1	170.0	[0..10]	[287..2]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGVEELSI EQLASSISTY KEQLEQVRQL LSEDPRNSEY ADMEKELKEV IALTEEVLAT  60
   61 AKQNEISLSD AGVSAEATPG SPDLEGAWEK TGLRNDPIHE GKFPVGTKVQ AVFSDDGEWY 120
  121 DATIEAHTAN GYFVAYDEWG NKEEVDPDNV RPIEQNAIVE AERLAQATKN ALKRKIEKAA 180
  181 SSDYQTKTLP AKLKIDPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.522879
Match:	2hqeA
Description:	No description for 2hqeA was found.

Predicted Domain #2

Region A:
Residues: [199-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPEDVKIAKR KKIHAFKSKA RFEQLEVVQN KKQNDWQQFQ TTKAKTKKVG FFTGRKKESI  60
   61 FKSPEDPFGK VGVTGSGKGL TDFQKREKHL HLKSGNAEGT DE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits