YRC Public Data Repository - Protein Structure Prediction

Protein:	NPRT1_ARATH
Organism:	Arabidopsis thaliana
Length:	559 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPRT1_ARATH.

Description	E-value	Query Range	Subject Range
NPRT2_ARATH - Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=NAPRT2 PE=2 SV=1	623.0	[0..1]	[559..1]
gi\|116309325, gi... - gi\|218194863\|gb\|EEC77290.1\| hypothetical protein OsI_15928 [Oryza sativa Indica Group], gi\|116309325... gi\|222628885 - gi\|222628885\|gb\|EEE61017.1\| hypothetical protein OsJ_14840 [Oryza sativa Japonica Group]	602.0	[0..19]	[559..23]
gi\|37787327 - gi\|37787327\|gb\|AAP69614.1\| nicotinate phosphoribosyltransferase-like protein [Medicago truncatula]	601.0	[0..1]	[559..1]
gi\|113564384, gi... - gi\|115458426\|ref\|NP_001052813.1\| Os04g0429800 [Oryza sativa (japonica cultivar-group)], gi\|113564384...	601.0	[0..19]	[559..23]
gi\|115933377, gi... - gi\|115976287\|ref\|XP_001176322.1\| PREDICTED: similar to CG3714-PA [Strongylocentrotus purpuratus], gi...	573.0	[0..3]	[559..23]
gi\|91091440 - gi\|91091440\|ref\|XP_972461.1\| PREDICTED: similar to CG3714 CG3714-PA [Tribolium castaneum]	565.0	[0..1]	[558..1]

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Predicted Domain #1

Region A:
Residues: [1-559]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKENGLDG KQSGRVINGP TNPMVTPLLN DLYQFTMAYA YWKAGKQSER SVFDLYFRKN  60
   61 PFGGEYTIFA GLEECIKFLA NFNLTDEEID FVRDSLPGCE EAFCDYLRGL DCSDIEVYAI 120
  121 SEGSVVFPKV PLLRIEGPVA VVQLLETPFL NLINYASLVA TNAARHRFVA GKSKLLLEFG 180
  181 ARRAQGPDGA ISASKYCYLG GFDATSNVAA GKLFGIPLRG THSHAFVSSF MSLDEIVDKV 240
  241 LRSSDGKSTC KDFICLVQTC LTKIQNSSSL QGIFSETNQS ELAAFISYAL AFPNSFLALV 300
  301 DTYDVMKSGI PNFCAVALAL NELGYKAVGI RLDSGDLAYL STEVRKFFCA IERDLKVPDF 360
  361 GKMIVTASND LNEETVDALN KQGHEVDAFG IGTNLVTCYA QAALGCVFKL VEINNQPRIK 420
  421 LSEDVTKVSI PCKKRTYRLF GKEGYPLVDI MTGENEPPPK VGERLLCRHP FNESKRAYVV 480
  481 PQRVEELLKC YWRGNADEAR EELEPLKELR NRCIKQLENM RPDHMRRLNP TPYKVSVSAK 540
  541 LYDFIHFLWL NEAPVGELH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.0
Match:	2f7fA
Description:	Crystal structure of Enterococcus faecalis putative nicotinate phosphoribosyltransferase, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits