YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20259906, gi\|...
Organism:	Arabidopsis thaliana
Length:	480 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20259906, gi|....

Description	E-value	Query Range	Subject Range
gi\|9802777, gi\|2... - gi\|9802777\|gb\|AAF99846.1\|AC051629_13 Unknown protein [Arabidopsis thaliana], pir\|\|A86304 hypothetica...	615.0	[0..1]	[480..1]
gi\|33146582, gi\|... - gi\|50935029\|ref\|XP_477042.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|50508621\|d...	449.0	[0..153]	[479..1]
gi\|55249775, gi\|... - gi\|58865478\|ref\|NP_001011950.1\| death associated protein 3 [Rattus norvegicus], gi\|55249775\|gb\|AAH85...	421.0	[0..108]	[479..24]
gi\|26328099 - gi\|26328099\|dbj\|BAC27790.1\| unnamed protein product [Mus musculus]	421.0	[0..108]	[479..29]
gi\|61367201, gi\|... - gi\|61369407\|gb\|AAX43331.1\| death associated protein 3 [synthetic construct], gi\|61367201\|gb\|AAX42965...	419.0	[0..115]	[479..38]
gi\|61357224, gi\|... - gi\|61359294\|gb\|AAX41696.1\| death associated protein 3 [synthetic construct], gi\|61357224\|gb\|AAX41354... DAP3 - death associated protein 3	419.0	[0..115]	[479..38]
gi\|109017499 - gi\|109017499\|ref\|XP_001113361.1\| PREDICTED: similar to death-associated protein 3 [Macaca mulatta]	418.0	[0..115]	[479..38]
gi\|55730281 - gi\|55730281\|emb\|CAH91863.1\| hypothetical protein [Pongo abelii] gi\|197098438 - gi\|197098438\|ref\|NP_001127473.1\| death associated protein 3 [Pongo abelii]	412.0	[0..115]	[479..38]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKYGLRIAA GNAKLNRKSS ILNNTVCHFS PPTSAAVGTL FPSLDHVHRC FSSSKSTKSS  60
   61 ITKTKKSEGK KSKPKGGDPG AAGAEEGEFG AAGGDDLEAG RAKRLADDEK IPSLDVGPNG 120
  121 R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLFTPKDTTL SQLTHKDIGS YFKFDEAALK AVLPEGLASG IEDEFNES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [170-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRPALLVRKS YLALRDNFRR IADPPMWPSD SKGVKLQKQI VLDGPVKCGK SIALAMLVHW  60
   61 ARDEGWLVLY APKGRDWTHG GYFYKNPHT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [259-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFWDTPLQAE NILKDFVKFN ESRLRELRCK IHDPIVLGEG AGVGYLKGAD AMPIPEDSTL  60
   61 YDLVQMGIKS THAAVNVVVR LRKELSVVKD VPVLIVIDQY NSWFTFSEFE EPVT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [373-480]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSCRPIHAR ELTTVNAFRS MMHEDMMVGA FSHSTAVGKL RKDLPDVPVD ARQQFPRYSL  60
   61 DEAEAVCYYY LRQRLVRREV FNEENWKKIY YLANGNGAEM RWLAPFMR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits