YRC Public Data Repository - Protein Structure Prediction

Protein:	NU98A_ARATH
Organism:	Arabidopsis thaliana
Length:	1041 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NU98A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	517.0	[0..17]	[925..190]
CO1A2_RAT - Collagen alpha-2(I) chain OS=Rattus norvegicus GN=Col1a2 PE=1 SV=3	483.0	[0..1]	[934..101]
gi\|19481644, gi\|... - gi\|22074292\|gb\|AAL06238.1\| ORF2311 [white spot syndrome virus], gi\|19481644\|gb\|AAL88920.1\| WSSV052 [...	480.0	[0..3]	[934..173]
CO1A2_MOUSE - Collagen alpha-2(I) chain OS=Mus musculus GN=Col1a2 PE=1 SV=2	460.0	[0..1]	[935..101]
CO1A2_LITCT - Collagen alpha-2(I) chain OS=Lithobates catesbeiana GN=COL1A2 PE=2 SV=1	447.0	[0..13]	[934..104]
gi\|21745458 - gi\|21745458\|gb\|AAM77398.1\|AF525468_1 fibrillar collagen precursor [Hydra vulgaris]	445.0	[0..1]	[935..127]

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Predicted Domain #1

Region A:
Residues: [1-936]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSSNPFGQ SSGTSPFGSQ SLFGQTSNTS SNNPFAPATP FGTSAPFAAQ SGSSIFGSTS  60
   61 TGVFGAPQTS SPFASTPTFG ASSSPAFGNS TPAFGASPAS SPFGGSSGFG QKPLGFSTPQ 120
  121 SNPFGNSTQQ SQPAFGNTSF GSSTPFGATN TPAFGAPSTP SFGATSTPSF GASSTPAFGA 180
  181 TNTPAFGASN SPSFGATNTP AFGASPTPAF GSTGTTFGNT GFGSGGAFGA SNTPAFGASG 240
  241 TPAFGASGTP AFGASSTPAF GASSTPAFGA SSTPAFGGSS TPSFGASNTS SFSFGSSPAF 300
  301 GQSTSAFGSS AFGSTPSPFG GAQASTPTFG GSGFGQSTFG GQQGGSRAVP YAPTVEADTG 360
  361 TGTQPAGKLE SISAMPAYKE KNYEELRWED YQRGDKGGPL PAGQSPGNAG FGISPSQPNP 420
  421 FSPSPAFGQT SANPTNPFSS STSTNPFAPQ TPTIASSSFG TATSNFGSSP FGVTSSSNLF 480
  481 GSGSSTTTSV FGSSSAFGTT TPSPLFGSSS TPGFGSSSSI FGSAPGQGAT PAFGNSQPST 540
  541 LFNSTPSTGQ TGSAFGQTGS AFGQFGQSSA PAFGQNSIFN KPSTGFGNMF SSSSTLTTSS 600
  601 SSPFGQTMPA GVTPFQSAQP GQASNGFGFN NFGQNQAANT TGNAGGLGIF GQGNFGQSPA 660
  661 PLNSVVLQPV AVTNPFGTLP AMPQISINQG GNSPSIQYGI SSMPVVDKPA PVRISSLLTS 720
  721 RHLLHRRVRL PARKYRPGEN GPKVPFFTDD EESSSTPKAD ALFIPRENPR ALVIRPVQQW 780
  781 SSRDKSILPK EQRPTAPLHD NGKSPDMATD AANHDRNGNG ELGATGERIH TSVNANQKPN 840
  841 GTTRSDQASE KERPYKTLSG HRAGEAAIVY EHGADIEALM PKLRQSDYFT EPRIQELAAK 900
  901 ERADPGYCRR VRDFVVGRHG YGSIKFMGET DVRRLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [937-1041]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LESLVQFNTR EVIVYMDESK KPAVGQGLNK PAEVTLLNIK CIDKKTGKQF TEGERVEKYK  60
   61 MMLKKKAEAQ GAEFVSFDPV KGEWKFRVEH FSSYKLGDED EEDGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	2q5xA
Description:	No description for 2q5xA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits