| Protein: | UBP13_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1115 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP13_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
1052.0 | [0..1] | [1115..1] |
|
Region A: Residues: [1-576] |
1 11 21 31 41 51
| | | | | |
1 MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI 60
61 PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY LDVADAANLP YGWSRYSQFS 120
121 LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV 180
181 RKVLDYWSYD SKKETGFVGL KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS 240
241 IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV 300
301 VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG 360
361 DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR DTMVKINDRY EFPLQLDLDR 420
421 EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV 480
481 KRALEEQYGG EEELPQNNPG FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH 540
541 LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDI
|
| Detection Method: |  |
| Confidence: | 84.39794 |
| Match: | 2f1zA |
| Description: | Crystal structure of HAUSP |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [577-678] |
1 11 21 31 41 51
| | | | | |
1 TEQIGKNIYF DLVDHEKVRS FRIQKQTPFQ QFKEEVAKEF GVPVQLQRFW IWAKRQNHTY 60
61 RPNRPLSPNE ELQTVGQIRE ASNKANNAEL KLFLEIERGP DD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [679-1115] |
1 11 21 31 41 51
| | | | | |
1 LPIPPPEKTS EDILLFFKLY DPENAVLRYV GRLMVKSSSK PMDIVGQLNK MAGFAPDEEI 60
61 ELFEEIKFEP CVMCEQIDKK TSFRLCQIED GDIICYQKPL SIEESEFRYP DVPSFLEYVQ 120
121 NRELVRFRTL EKPKEDEFTM ELSKLHTYDD VVERVAEKLG LDDPSKLRLT SHNCYSQQPK 180
181 PQPIKYRGVD HLSDMLVHYN QTSDILYYEV LDIPLPELQG LKTLKVAFHS ATKDEVIIHN 240
241 IRLPKQSTVG DVINELKTKV ELSHQDAELR LLEVFFHKIY KIFPSTERIE NINDQYWTLR 300
301 AEEIPEEEKN IGPNDRLIHV YHFTKEAGQN QQVQNFGEPF FLVIHEGETL EEIKTRIQKK 360
361 LHVPDEDFAK WKFASFSMGR PDYLLDTDVV YNRFQRRDVY GAWEQYLGLE HIDNAPKRAY 420
421 AANQNRHAYE KPVKIYN
|
| Detection Method: | |
| Confidence: | 1.34 |
| Match: | 2ibiA |
| Description: | No description for 2ibiA was found. |
