YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RGAP7_ARATH
Organism: Arabidopsis thaliana
Length: 870 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for RGAP7_ARATH.

Predicted Domain #1
Region A:
Residues: [1-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASLAALER PRGSASNTVF KSGPLFISSK GLGWTSWKKR WFILTRTSLV FFKNDPGTLP  60
   61 QKGGEVNLTL GGIDLNNSGS VVVREDKKLL TVLFPDGRDG RAFTLKAETF EDLYEWKTAL 120
  121 EQALAQAPNA ALIMGQNGIF RAETNEAIEG REKRPLKSLV VGRPILLALE DIDGSPSFLE 180
  181 KALQFIEKYG TKIEGILRQS ADVEEVERRV QEYEQGKTEF TFDEDPHVVG DCIKHVLREL 240
  241 PSSPVSASCC TALLEAYRIE SKEARISSLR SAIAETFPEP NRRLLQRILK MMHTISSHSH 300
  301 ENRMNPNAVA ACMAPLLLRP LLAGECDLED DFDGGEDNSA QLLAAANAAN NA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.30103
Match: 3cxlA
Description: No description for 3cxlA was found.

Predicted Domain #2
Region A:
Residues: [353-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAIITVLLED YGSIFDEENI QRCSISTESH IGNSGPDDSS DDDNNMKNGY HNADNEVEPV  60
   61 TDDDNDRALS GKMSESSGCT GSDLYEYKGF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [443-870]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VADDSDIESP RDTNGPRCNS NIRTDHLMRN PFVNSTDQQA GEQIGDDPTK YGVNSCLAHV  60
   61 SESYQQSGTG LNVPTHGNTL AAPGLESPSA KSVNKGTPSS VHAKRATFWG RGSARKISTD 120
  121 GSFDSSGEDE LAIQRLETTK NELRQRIAKE ARGNAILQAS LERRKQALHE RRLSLEQDVS 180
  181 RLQEQLQAER DLRAALEVGL SMSSGQFSSH GVDSKTRAEL EEIALAEADV ARLKQKVAEL 240
  241 HHQLNQQRQT HFGSFSDARD THQYLQNHNP QKRFLQQDFD STLAYVNHER KQRHEENVLG 300
  301 AEWRNSKGAG SFGVGNSRQP SRKQIPESTN TTDSKISEES GKISVDKLSS IDSPSIPSTS 360
  361 RVLDITEYPR LNHPSAAASA ALVELTTRLD FFKERRSQLM EQLQNLDLNY GGSSSQDFIH 420
  421 RPSSPPWN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle