YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22329926, gi\|...
Organism:	Arabidopsis thaliana
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22329926, gi|....

Description	E-value	Query Range	Subject Range
gi\|25513515, gi\|... - gi\|9665092\|gb\|AAF97283.1\|AC010164_5 Unknown protein [Arabidopsis thaliana], pir\|\|C86461 F14M2.10 pro...	384.0	[0..1]	[325..1]
gi\|92898737 - gi\|92898737\|gb\|ABE94310.1\| Protein of unknown function DUF179 [Medicago truncatula]	260.0	[0..71]	[311..70]
gi\|53982670, gi\|... - gi\|53982670\|gb\|AAV25649.1\| unknown protein [Oryza sativa Japonica Group], gi\|222631631\|gb\|EEE63763.1...	257.0	[0..63]	[324..83]
gi\|113868871, gi... - gi\|113868871\|ref\|YP_727360.1\| hypothetical protein H16_A2916 [Ralstonia eutropha H16], gi\|113527647\|...	249.0	[0..127]	[318..2]
gi\|68554123, gi\|... - gi\|94311675\|ref\|YP_584885.1\| hypothetical protein Rmet_2743 [Ralstonia metallidurans CH34], gi\|93355...	246.0	[0..134]	[318..10]
gi\|207744139, gi... - gi\|207744139\|ref\|YP_002260531.1\| cog1678, transcriptional regulator protein [Ralstonia solanacearum ... gi\|206591371, gi... - gi\|207728126\|ref\|YP_002256520.1\| cog1678, putative transcriptional regulator protein [Ralstonia sola... gi\|83727195, gi\|... - gi\|83746229\|ref\|ZP_00943283.1\| Transcriptional regulator, algH [Ralstonia solanacearum UW551], gi\|83...	246.0	[0..129]	[318..1]
gi\|73540411, gi\|... - gi\|73540411\|ref\|YP_294931.1\| hypothetical protein Reut_A0705 [Ralstonia eutropha JMP134], gi\|7211782...	245.0	[0..127]	[318..2]
Y675_RALSO - UPF0301 protein RSc0675 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0675 PE=3 SV=1 Y675_RALSO - UPF0301 protein RSc0675 OS=Ralstonia solanacearum GN=RSc0675 PE=3 SV=1	245.0	[0..129]	[318..1]
gi\|37681053, gi\|... - gi\|37681053\|ref\|NP_935662.1\| hypothetical protein VV2869 [Vibrio vulnificus YJ016], gi\|37199803\|dbj\|...	244.0	[0..135]	[320..17]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLWTLQLKD VTIRNPIFSS SIPEKSSSFS RKLCELEFRF LNRKVSASPY RSLVVRATSK  60
   61 KSNDDSSSPG DASQENKPSN GNKSGDSAAP KSFGLNTDWR EFRANLFMKE QEEKAEAEGH 120
  121 ESEPIGLKWA HPIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPETGCVLVA TEKLDGYRTF ARTVVLLLRA GTRHPQEGPF GVVINRPLHK NIKHMKSTKT  60
   61 ELATTFSECS LYFGGPLEAS MFLLKTGDKT KIPGFEEVMP GLNFGTRNSL DEAAVLVKKG 120
  121 VLKPQEFRFF VGYAGWQLDQ LREEIESDYW HVAACSSDLI CGASSENLWE EILQLMGGQY 180
  181 SELSRKPKLD I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.045757
Match:	2hafA
Description:	No description for 2hafA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits