YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22329926, gi\|...
Organism:	Arabidopsis thaliana
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22329926, gi|....

Description	E-value	Query Range	Subject Range
gi\|25513515, gi\|... - gi\|9665092\|gb\|AAF97283.1\|AC010164_5 Unknown protein [Arabidopsis thaliana], pir\|\|C86461 F14M2.10 pro...	384.0	[0..1]	[325..1]
gi\|92898737 - gi\|92898737\|gb\|ABE94310.1\| Protein of unknown function DUF179 [Medicago truncatula]	260.0	[0..71]	[311..70]
gi\|53982670, gi\|... - gi\|53982670\|gb\|AAV25649.1\| unknown protein [Oryza sativa Japonica Group], gi\|222631631\|gb\|EEE63763.1...	257.0	[0..63]	[324..83]
gi\|113868871, gi... - gi\|113868871\|ref\|YP_727360.1\| hypothetical protein H16_A2916 [Ralstonia eutropha H16], gi\|113527647\|...	249.0	[0..127]	[318..2]
gi\|68554123, gi\|... - gi\|94311675\|ref\|YP_584885.1\| hypothetical protein Rmet_2743 [Ralstonia metallidurans CH34], gi\|93355...	246.0	[0..134]	[318..10]
gi\|207744139, gi... - gi\|207744139\|ref\|YP_002260531.1\| cog1678, transcriptional regulator protein [Ralstonia solanacearum ... gi\|206591371, gi... - gi\|207728126\|ref\|YP_002256520.1\| cog1678, putative transcriptional regulator protein [Ralstonia sola... gi\|83727195, gi\|... - gi\|83746229\|ref\|ZP_00943283.1\| Transcriptional regulator, algH [Ralstonia solanacearum UW551], gi\|83...	246.0	[0..129]	[318..1]
gi\|73540411, gi\|... - gi\|73540411\|ref\|YP_294931.1\| hypothetical protein Reut_A0705 [Ralstonia eutropha JMP134], gi\|7211782...	245.0	[0..127]	[318..2]
Y675_RALSO - UPF0301 protein RSc0675 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0675 PE=3 SV=1 Y675_RALSO - UPF0301 protein RSc0675 OS=Ralstonia solanacearum GN=RSc0675 PE=3 SV=1	245.0	[0..129]	[318..1]
gi\|37681053, gi\|... - gi\|37681053\|ref\|NP_935662.1\| hypothetical protein VV2869 [Vibrio vulnificus YJ016], gi\|37199803\|dbj\|...	244.0	[0..135]	[320..17]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLWTLQLKD VTIRNPIFSS SIPEKSSSFS RKLCELEFRF LNRKVSASPY RSLVVRATSK  60
   61 KSNDDSSSPG DASQENKPSN GNKSGDSAAP KSFGLNTDWR EFRANLFMKE QEEKAEAEGH 120
  121 ESEPIGLKWA HPIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.271	d.58.39	Glutamyl tRNA-reductase catalytic, N-terminal domain
View	Download	0.244	d.224.1	SufE-like

Predicted Domain #2

Region A:
Residues: [135-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPETGCVLVA TEKLDGYRTF ARTVVLLLRA GTRHPQEGPF GVVINRPLHK NIKHMKSTKT  60
   61 ELATTFSECS LYFGGPLEAS MFLLKTGDKT KIPGFEEVMP GLNFGTRNSL DEAAVLVKKG 120
  121 VLKPQEFRFF VGYAGWQLDQ LREEIESDYW HVAACSSDLI CGASSENLWE EILQLMGGQY 180
  181 SELSRKPKLD I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.045757
Match:	2hafA
Description:	No description for 2hafA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits