YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GSOX4_ARATH
Organism: Arabidopsis thaliana
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSOX4_ARATH.

Description E-value Query
Range
Subject
Range
CE31971 - dihydrolipoamide dehydrogenase status:Confirmed UniProt:O17953 protein_id:CAB05249.2
290.0 [0..6] [448..25]

Back

Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAPSPINS QHVAVIGAGA AGLVAARELR REGHTVVVLD REKQVGGLWV YTPETESDEL  60
   61 GLDPTRPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.09691
Match: 2gv8A
Description: No description for 2gv8A was found.

Predicted Domain #2
Region A:
Residues: [69-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHSSVYKSLR TNLPRECMGY KDFPFVPRGD DPSRDSRRYP SHREVLAYLQ DFATEFNIEE  60
   61 MIRFETEVLR VEPVNGKWRV QSKTGGGFSN DEIYDAVVMC CGHFAEPNIA QIPGIESWPG 120
  121 RQTHSHSYRV PDPFKDEVVV VIGNFASGAD ISRDISKVAK EVHIASRASK SNTFEKRPVP 180
  181 NNNLWMHSEI DTAHEDGTIV FKNGKVVHAD TIVHCTGYKY YFPFLETNNY MRVDDNRVEP 240
  241 LYKHIFPPAL APGLSFIGLP AMGLQFYMFE VQSKWVAAVL SGRVTLPSVD EMMDDLKLSY 300
  301 ETQEALGIPK RYTHKLGKSQ CEYLDWIADL CGFPHVEHWR DQEVTRGYQR LGNQPETFRD 360
  361 EWDDDDLMEE AYEDFARLNL INFHPSRFLE SGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1nhrA
Description: AN L40C MUTATION CONVERTS THE CYSTEINE-SULFENIC ACID REDOX CENTRE IN ENTEROCOCCAL NADH PEROXIDASE TO A DISULFIDE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on sulfur group of donors 2.70372401877577 bayes_pls_golite062009
catalytic activity 2.35839632763616 bayes_pls_golite062009
antioxidant activity 2.11618940985922 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.80998690919987 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 1.66219747860319 bayes_pls_golite062009
disulfide oxidoreductase activity 1.61791469515657 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 1.2330319552852 bayes_pls_golite062009
oxidoreductase activity 1.03218111092471 bayes_pls_golite062009
binding 0.484552948355516 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle