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View Structure Prediction Details

Protein: AI5L6_ARATH
Organism: Arabidopsis thaliana
Length: 454 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AI5L6_ARATH.

Description E-value Query
Range
Subject
Range
gi|13346159, gi|... - gi|79326271|ref|NP_001031786.1| ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA bindi...
287.0 [0..1] [428..1]
gi|83853821 - gi|83853821|gb|ABC47854.1| bzip transcription factor [Glycine max]
224.0 [0..5] [454..1]
gi|13775111 - gi|13775111|gb|AAK39132.1|AF369792_1 bZIP transcription factor 6 [Phaseolus vulgaris]
223.0 [0..5] [454..1]
gi|42561991 - gi|42561991|gb|AAS20434.1| AREB-like protein [Lycopersicon esculentum]
222.0 [0..1] [454..1]
gi|110749701 - gi|110749701|gb|ABG90380.1| bZIP transcription factor [Caragana korshinskii]
221.0 [0..5] [454..1]
gi|94503774 - gi|94503774|gb|ABF29696.1| abscisic acid responsive element-binding protein 2 [Populus suaveolens]
218.0 [0..1] [454..1]
gi|14571808 - gi|14571808|dbj|BAB61098.1| phi-2 [Nicotiana tabacum]
213.0 [0..1] [454..56]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRLNFKSF VDGVSEQQPT VGTSLPLTRQ NSVFSLTFDE FQNSWGGGIG KDFGSMNMDE  60
   61 LLKNIWTAEE SHSMMGNNTS YTNISNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSGNTVINGG GNNIGGLAVG VGGESGGFFT GGSLQRQGSL TLPRTISQKR VDDVWKELMK  60
   61 EDDIGNGVVN GGTSGIPQRQ QTLGEMTLEE FLVRAGVVRE EPQPVESVTN FNGGFYGFGS 120
  121 NGGLGTASNG FVANQPQDLS GNGVAVRQDL LTAQTQPLQM QQPQMVQQPQ MVQQPQQLIQ 180
  181 TQERPFPKQT TIAFSNTVDV VNRSQPATQC QEVKPSILGI HNHPMNNNLL QAVDFKTGVT 240
  241 VAAVSPGSQM SPDLTPKSAL DASLSPVPYM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.30103
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [358-454]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGRVRKTGAV LEKVIERRQK RMIKNRESAA RSRARKQAYT MELEAEIAQL KELNEELQKK  60
   61 QVEIMEKQKN QLLEPLRQPW GMGCKRQCLR RTLTGPW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle