YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145358598, gi...
Organism:	Arabidopsis thaliana
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145358598, gi....

Description	E-value	Query Range	Subject Range
PDXK_ARATH - Pyridoxal kinase OS=Arabidopsis thaliana GN=PK PE=1 SV=2	228.0	[0..35]	[343..1]
gi\|92875603 - gi\|92875603\|gb\|ABE83533.1\| Pyridoxal kinase [Medicago truncatula]	226.0	[0..37]	[343..2]
gi\|20808610 - gi\|20808610\|ref\|NP_623781.1\| Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Thermoanaerobac... gi\|20808610, gi\|... - gi\|20808610\|ref\|NP_623781.1\| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Thermoanaerobac... gi\|214034926, gi... - gi\|254479155\|ref\|ZP_05092505.1\| phosphomethylpyrimidine kinase [Carboxydibrachium pacificum DSM 1265...	221.0	[0..52]	[320..4]
gi\|106895590, gi... - gi\|158321715\|ref\|YP_001514222.1\| phosphomethylpyrimidine kinase [Alkaliphilus oremlandii OhILAs], gi...	220.0	[0..50]	[319..2]
gi\|241883839, gi... - gi\|241903750\|ref\|ZP_04788468.1\| phosphomethylpyrimidine kinase [Thermoanaerobacter brockii subsp. fi... gi\|166856889, gi... - gi\|76796028\|ref\|ZP_00778397.1\| Phosphomethylpyrimidine kinase [Thermoanaerobacter ethanolicus ATCC 3...	219.0	[0..52]	[324..4]
gi\|114805167, gi... - gi\|167039224\|ref\|YP_001662209.1\| phosphomethylpyrimidine kinase [Thermoanaerobacter sp. X514], gi\|16... gi\|242257483, gi... - gi\|242257483\|ref\|ZP_04802346.1\| phosphomethylpyrimidine kinase [Thermoanaerobacter sp. X513], gi\|242...	219.0	[0..52]	[324..4]
PDXK_SHEEP - Pyridoxal kinase OS=Ovis aries GN=PDXK PE=1 SV=1	218.0	[0..51]	[342..6]
gi\|255670458, gi... - gi\|77556989\|gb\|ABA99785.1\| Pyridoxal kinase, putative, expressed [Oryza sativa (japonica cultivar-gr...	218.0	[0..35]	[343..1]
PDXK_BOVIN - Pyridoxal kinase OS=Bos taurus GN=PDXK PE=2 SV=1	218.0	[0..51]	[342..6]
gi\|110802744, gi... - gi\|110802744\|ref\|YP_698658.1\| phosphomethylpyrimidine kinase [Clostridium perfringens SM101], gi\|110...	218.0	[0..50]	[316..5]

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Predicted Domain #1

Region A:
Residues: [1-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFSFPTTTT TSLPFHKDHN HFNLNRNLRS RNRRMTTPPV LSLALPSDTG RVLSIQSHTV  60
   61 QGYVGNKSAV FPLQLLGYDV DPINSVQFSN HTGYPTFKGQ VLNGQQLCDL IEGLEANDLL 120
  121 FYTHVLTGYI GSVSFLDTIL EVINKLRSVN PNLTYVCDPV MGDEGKLYVP EELVHVYREK 180
  181 VVPLASMLTP NQFEAEKLTG LRINSEEDGR EACAILHAAG PSKVVITSIT IGGILLLIGS 240
  241 HQKEKGLKPE QFKILIHKIP AYFTGTGDLM TALLLGWSNK YPDNLDKAAE LAVSTLQALL 300
  301 RRTLDDYKRA GYDPTSSSLE IRLIQSQEDI RNPKVELKAE RYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1lhpA
Description:	Pyridoxal kinase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits