YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PEX6_ARATH
Organism: Arabidopsis thaliana
Length: 941 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for PEX6_ARATH.

Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVERRNPLVL SSTRSTLRSV LNSSQPSSAD GDRVLNKDGD LLRGNARLSA GILRWRKDGE  60
   61 NVSDAKLDSL DDSALVGLST QLLKRLSINS GSLVVVKNIE IGIQRVAQVV VLDPPKTTLE 120
  121 DASL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-941]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQVPVSDSLH TMLVFPTYDL MGQQLLDQEV AYLSPMLAFN LSLHISCLKS LVHRGNGVLE  60
   61 KYFEAKCDEE FIGKSAEDGS KIGLDLEPVS QVPGYASHLR VSFVKIPECG TIPSLKVNSS 120
  121 FEAEERQGLI DSALQKYFGT DRQLSRGDIF RIYIDWNCGS SICNPCSQRL CSESDDYIYF 180
  181 KVIAMEPSNE RFLRVNHSQT ALVLGGTVSS GLPPDLLVYR SKVPMPLQEE TVNILASVLS 240
  241 PPLCPSALAS KLRVAVLLHG IPGCGKRTVV KYVARRLGLH VVEFSCHSLL ASSERKTSTA 300
  301 LAQTFNMARR YSPTILLLRH FDVFKNLGSQ DGSLGDRVGV SFEIASVIRE LTEPVSNGDS 360
  361 SMEEKSNSNF SENEVGKFRG HQVLLIASAE STEGISPTIR RCFSHEIRMG SLNDEQRSEM 420
  421 LSQSLQGVSQ FLNISSDEFM KGLVGQTSGF LPRDLQALVA DAGANLYISQ ESETKKINSL 480
  481 SDDLHGVDIH QASQIDNSTE KLTAKEDFTK ALDRSKKRNA SALGAPKVPN VKWDDVGGLE 540
  541 DVKTSILDTV QLPLLHKDLF SSGLRKRSGV LLYGPPGTGK TLLAKAVATE CSLNFLSVKG 600
  601 PELINMYIGE SEKNVRDIFE KARSARPCVI FFDELDSLAP ARGASGDSGG VMDRVVSQML 660
  661 AEIDGLSDSS QDLFIIGASN RPDLIDPALL RPGRFDKLLY VGVNADASYR ERVLKALTRK 720
  721 FKLSEDVSLY SVAKKCPSTF TGADMYALCA DAWFQAAKRK VSKSDSGDMP TEEDDPDSVV 780
  781 VEYVDFIKAM DQLSPSLSIT ELKKYEMLRD QFQGRSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 157.0
Match: 3cf1A
Description: No description for 3cf1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle