YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30683293, gi\|...
Organism:	Arabidopsis thaliana
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30683293, gi|....

Description	E-value	Query Range	Subject Range
gi\|13430738 - gi\|13430738\|gb\|AAK25991.1\|AF360281_1 unknown protein [Arabidopsis thaliana]	438.0	[0..1]	[312..1]
gi\|92871423 - gi\|92871423\|gb\|ABE80411.1\| conserved hypothetical protein [Medicago truncatula]	390.0	[0..1]	[308..45]
gi\|50922387, gi\|... - gi\|50922387\|ref\|XP_471554.1\| OSJNBa0019J05.15 [Oryza sativa (japonica cultivar-group)], gi\|38346430\|... gi\|116309137 - gi\|116309137\|emb\|CAH66239.1\| OSIGBa0145C02.4 [Oryza sativa (indica cultivar-group)]	386.0	[0..4]	[312..1]
CENPO_MOUSE - Centromere protein O OS=Mus musculus GN=Cenpo PE=2 SV=1	304.0	[0..22]	[294..15]
CENPO - centromere protein O	298.0	[0..22]	[294..15]
gi\|114576462 - gi\|114576462\|ref\|XP_001147011.1\| PREDICTED: centromere protein O [Pan troglodytes]	297.0	[0..22]	[294..15]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEMIVSMDQ DIRLDTTRAR LSNLLKRHRE LSDRLTRDSD KTMLDRLNKE FEAARRSQSQ  60
   61 EVFLDGEEWN DGLLATLRER VHMEADRKAD NGNAGFSLVC HPEERITYRV GNKVICCLD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.825	N/A	N/A	a.7.6	Ribosomal protein S20

Predicted Domain #2

Region A:
Residues: [120-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSRIGIQFET STAGETYEVY HCVLESKSFL EKMIVLEHTI PFFLPLSDLE NDLLFSNAKK  60
   61 FIDNVGDLLQ AYVDRKEQVR LIKELFGHQI SEIYHS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.420216
Match:	PF09496.1
Description:	No description for PF09496.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.928	N/A	N/A	a.8.3	Families 57/38 glycoside transferase middle domain

Predicted Domain #3

Region A:
Residues: [216-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPYHMIEFSM DDCDCKFVVS LRYGDLLCEL PTKVRILVWP MHHLSKKQCT SPGSPAIPVR  60
   61 LPFAEDAFRI QSLPEAYAEI MPNMPNEIRQ LFQTSPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits