| Protein: | gi|18377498, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 281 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18377498, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
281.0 | [0..1] | [264..1] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MAGITSTVGF NAILAGATKT VSHPVKSKLF GLRLCVPEFS IVSLSPYHHR RCPAITCRYG 60
61 GGGGGGSRFP GDRRGRQKES E
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.481 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.439 | d.58.17 | Metal-binding domain |
| View | Download | 0.431 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.426 | d.68.3 | SirA-like |
| View | Download | 0.396 | d.93.1 | SH2 domain |
|
Region A: Residues: [82-158] |
1 11 21 31 41 51
| | | | | |
1 DDDSLDISAI RSATVRLIDD QQNMIGLVSK EEAVRRAEDA ELDLVILSPD ADPPVVRMMD 60
61 YSKYRYEQQK RKKEQQK
|
| Detection Method: | |
| Confidence: | 26.0 |
| Match: | 1tifA |
| Description: | TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 5.47485713101079 | bayes_pls_golite062009 |
| translation regulator activity | 1.62528736558737 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 1.60662288414996 | bayes_pls_golite062009 |
| binding | 1.47561914415547 | bayes_pls_golite062009 |
| nucleic acid binding | 1.12320467511263 | bayes_pls_golite062009 |
|
Region A: Residues: [159-281] |
1 11 21 31 41 51
| | | | | |
1 KTTRMDLKEL KMGYNIDQHD YSVRMRAARK FLQDGDKVKV IVNMKGRENE FRNIAIELLR 60
61 RFQTEIGELG TEESKNFRDR NLFIVLVPNK EVIRKVQEPP PKKKKKPADD KVSAANITAT 120
121 QDI
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1tigA |
| Description: | TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| translation initiation factor activity | 8.09269133854598 | bayes_pls_golite062009 |
| translation regulator activity | 4.19718241948497 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 4.18160226822061 | bayes_pls_golite062009 |
| nucleic acid binding | 3.21583663075334 | bayes_pls_golite062009 |
| binding | 2.86350131209009 | bayes_pls_golite062009 |
