| Protein: | gi|55296755, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 604 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55296755, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
353.0 | [0..1] | [603..1] |
|
Region A: Residues: [1-218] |
1 11 21 31 41 51
| | | | | |
1 MPKRVADEIA ALPEPRGPLR RPCADLSRRV RLLAPLLDHL PASSSSSSST PLADALGAAR 60
61 DLLRKTRDGS KIDQAMRGDA FLDEFAGVNR QIHLALDALP YNTFHMPQEV QEQVALVHSQ 120
121 FQRASTRTDP PDTQLSMDLA WALTDNPSDP ALLTRISHKL QLHTMADMKN ESIALHNMVI 180
181 STAGEPDGCV DQMSSLLKKL KDCVVTEDHA NDALTTRS
|
| Detection Method: |  |
| Confidence: | 3.154902 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [219-279] |
1 11 21 31 41 51
| | | | | |
1 ASIKHRSPII PDEFRCPISL ELMQDPVIVS SGQTYERSCI QKWLDSGHKT CPKTQQPLSH 60
61 T
|
| Detection Method: | |
| Confidence: | 9.39794 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [280-604] |
1 11 21 31 41 51
| | | | | |
1 SLTPNFVLKS LISQWCEANG IELPKNKQNS RDKKAAKSSD YDHAGLVSLM NRLRSGNQDE 60
61 QRAAAGEIRL LAKRNVNNRI CIAEAGAIPL LVNLLSSSDP RTQEHAVTAL LNLSIHENNK 120
121 ASIVDSHAIP KIVEVLKTGS METRENAAAT LFSLSVVDEN KVTIGAAGAI PPLINLLCDG 180
181 SPRGKKDAAT AIFNLCIYQG NKVRAVKAGI VIHLMNFLVD PTGGMIDEAL SLLSILAGNP 240
241 EGKIVIARSE PIPPLVEVIK TGSPRNRENA AAILWLLCSA DTEQTLAAKA AGVEDALKEL 300
301 SETGTDRAKR KASSILELMH QANEA
|
| Detection Method: | |
| Confidence: | 46.30103 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
