| Protein: | PUB12_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 611 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB12_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
348.0 | [0..1] | [603..1] |
|
|
320.0 | [0..5] | [607..15] |
|
|
272.0 | [0..15] | [600..45] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MPKRVADEIA ALPEPRGPLR RPCADLSRRV RLLAPLLDHL PASSSSSSST PLADALGAAR 60
61 DLLRKTRDGS KIDQAM
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.921 | a.7.16 | Description not found. |
|
Region A: Residues: [77-220] |
1 11 21 31 41 51
| | | | | |
1 RGDAFLDEFA GVNRQIHLAL DALPYNTFHM PQEVQEQVAL VHSQFQRAST RTDPPDTQLS 60
61 MDLAWALTDN PSDPALLTRI SHKLQLHTMA DMKNESIALH NMVISTAGEP DGCVDQMSSL 120
121 LKKLKDCVVT EDHANDALTT RSAS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.805 | N/A | N/A | a.29.13 | Description not found. |
|
Region A: Residues: [221-305] |
1 11 21 31 41 51
| | | | | |
1 IKHRSPIIPD EFRCPISLEL MQDPVIVSSG QTYERSCIQK WLDSGHKTCP KTQQPLSHTS 60
61 LTPNFVLKSL ISQWCEANGI ELPKN
|
| Detection Method: | |
| Confidence: | 6.69897 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [306-611] |
1 11 21 31 41 51
| | | | | |
1 KQNSRDKKAA KSSDYDHAGL VSLMNRLRSG NQDEQRAAAG EIRLLAKRNV NNRICIAEAG 60
61 AIPLLVNLLS SSDPRTQEHA VTALLNLSIH ENNKASIVDS HAIPKIVEVL KTGSMETREN 120
121 AAATLFSLSV VDENKVTIGA AGAIPPLINL LCDGSPRGKK DAATAIFNLC IYQGNKVRAV 180
181 KAGIVIHLMN FLVDPTGGMI DEALSLLSIL AGNPEGKIVI ARSEPIPPLV EVIKTGSPRN 240
241 RENAAAILWL LCSADTEQTL AAKAAGVEDA LKELSETGTD RAKRKASSIL ELMHQANEDS 300
301 LKGNGH
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
