YRC Public Data Repository - Protein Structure Prediction

Protein:	MUS81_ARATH
Organism:	Arabidopsis thaliana
Length:	659 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUS81_ARATH.

Description	E-value	Query Range	Subject Range
ERCC4_CRIGR, XPF... - DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=2, DNA repair endonuclease XPF - ...	336.0	[0..17]	[657..324]
gi\|73959081 - gi\|73959081\|ref\|XP_536967.2\| PREDICTED: similar to excision repair cross-complementing rodent repair...	333.0	[0..17]	[657..336]
gi\|109487701 - gi\|109487701\|ref\|XP_222534.4\| PREDICTED: similar to excision repair cross-complementing rodent repai...	332.0	[0..17]	[657..335]
MUS81_ORYSJ - Crossover junction endonuclease MUS81 OS=Oryza sativa subsp. japonica GN=MUS81 PE=1 SV=1	329.0	[0..4]	[659..7]
XPF_MOUSE, ERCC4... - DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=2, DNA repair endonuclease XPF - Mus mu...	327.0	[0..17]	[657..324]
gi\|109127649 - gi\|109127649\|ref\|XP_001107209.1\| PREDICTED: excision repair cross-complementing rodent repair defici...	326.0	[0..17]	[657..335]

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Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDERRVLCP ENRGLAAYVL QKKQEYAEKP KGLSENLERT FVKGYRSVCD AKDPINTLKD  60
   61 LSQIKGFGKW MVKLMKGYFD TAVESSEQED LPDNRAGKKA NGKKRYIPQR NSVGYALLIT 120
  121 LHRRTTNGKE FMRKQELIDA ADANGLSHAP VGPEKGKGKA GLGHSKREWY SGWSCMTTLI 180
  181 QKGLVVKSSN PAKYMLTVEG REVANECILR SGLPDSVDIL SVDEMDPTPQ AKKTPNQNPT 240
  241 CSFTMREELP YVDPRCRAQS AIPSDILEKF TPFGYSKEQV VAAFREVSDG SGDKDPSTLW 300
  301 LSVMCHLRQA EVYNSCPDSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.522879
Match:	1bpdA
Description:	CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [321-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKKDSSGPF KSQIRQVDLE GSRAKKFRSC NDGSTLNPCS SGSSHAVKAC SSSLASDGTK  60
   61 GITNIPRLPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [391-659]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQFGETFEEA YDVILILDDR EKFATKGSRS RNIVENICSE FNIKIEVRRL PVGDCIWIAR  60
   61 HKYLETEYVL DFIAERKNVD DMRSSIRDNR YRDQKLRLQR SGFKKLIYIL EGDPNHSDAA 120
  121 ESIKTACFTT EILEGFDVLR THGLGETLRK YGYLTKSIYQ YYKLRVNDND QSKGAASCPS 180
  181 FDSFVKRCQD LDKMTISDVF AIQLMQVPQV TEEIAIAVLD MYPTLLSLAS AYSHLEADVS 240
  241 AQEEMLRNRS NNVICASASK NIFKLVWGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.045757
Match:	2zixA
Description:	No description for 2zixA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits