| Protein: | SPS1_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 430 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPS1_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
327.0 | [0..26] | [430..8] |
|
|
327.0 | [0..22] | [430..3] |
|
|
321.0 | [0..1] | [430..1] |
|
|
315.0 | [0..68] | [430..43] |
|
|
314.0 | [0..14] | [430..5] |
|
|
311.0 | [0..90] | [428..3] |
|
|
310.0 | [0..11] | [430..4] |
|
|
306.0 | [0..78] | [429..1] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MSWRWALARR VAALGATSGG GDGATAQAQR LFSSAAALLG RHPPPPSPPH YQIRSKVVGC 60
61 RGATFVSSRW LHDAQYQVRQ DGLS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.854 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
|
Region A: Residues: [85-430] |
1 11 21 31 41 51
| | | | | |
1 RSEEQQDPFE LVADELSLLA NRLRSMVAAE VPKLASAAEY FFKVGAEGKR FRPTVLLLMA 60
61 SALKFPLSDS TEVGVLTILA NKLRTRQQNI AEITEMIHVA SLLHDDVLDD ADTRRGVSSL 120
121 NCIMGNKLSV LAGDFLLSRA CVALAALGNT EVVSLMATAV EHLVTGETMQ ISTSREQRRS 180
181 MDYYLQKTYY KTASLISNSC KAVAILAGHT ADVSMLAYEY GRNLGLAFQL IDDVLDFTGT 240
241 SASLGKGSLT DIRHGIITAP MLYAMEEFPQ LHEVVDRGFD NPANVELALD YLQKSRGIEK 300
301 TKELAREHAN RAIKAIEALP DSDDEDVLTS RRALIDITER VITRTK
|
| Detection Method: | |
| Confidence: | 78.69897 |
| Match: | 1wy0A |
| Description: | Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3 |
Matching Structure (courtesy of the PDB): |
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