| Protein: | SPS1_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 430 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPS1_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
327.0 | [0..26] | [430..8] |
|
|
327.0 | [0..22] | [430..3] |
|
|
321.0 | [0..1] | [430..1] |
|
|
315.0 | [0..68] | [430..43] |
|
|
314.0 | [0..14] | [430..5] |
|
|
311.0 | [0..90] | [428..3] |
|
|
310.0 | [0..11] | [430..4] |
|
|
306.0 | [0..78] | [429..1] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MSWRWALARR VAALGATSGG GDGATAQAQR LFSSAAALLG RHPPPPSPPH YQIRSKVVGC 60
61 RGATFVSSRW LHDAQYQVRQ DGLS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.854 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.854 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.834 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.834 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.829 | a.24.28 | Description not found. |
| View | Download | 0.778 | a.39.1 | EF-hand |
| View | Download | 0.770 | a.39.1 | EF-hand |
| View | Download | 0.753 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.750 | a.7.16 | Description not found. |
| View | Download | 0.733 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [85-430] |
1 11 21 31 41 51
| | | | | |
1 RSEEQQDPFE LVADELSLLA NRLRSMVAAE VPKLASAAEY FFKVGAEGKR FRPTVLLLMA 60
61 SALKFPLSDS TEVGVLTILA NKLRTRQQNI AEITEMIHVA SLLHDDVLDD ADTRRGVSSL 120
121 NCIMGNKLSV LAGDFLLSRA CVALAALGNT EVVSLMATAV EHLVTGETMQ ISTSREQRRS 180
181 MDYYLQKTYY KTASLISNSC KAVAILAGHT ADVSMLAYEY GRNLGLAFQL IDDVLDFTGT 240
241 SASLGKGSLT DIRHGIITAP MLYAMEEFPQ LHEVVDRGFD NPANVELALD YLQKSRGIEK 300
301 TKELAREHAN RAIKAIEALP DSDDEDVLTS RRALIDITER VITRTK
|
| Detection Method: | |
| Confidence: | 78.69897 |
| Match: | 1wy0A |
| Description: | Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3 |
Matching Structure (courtesy of the PDB): |
|
