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View Structure Prediction Details

Protein: gi|52076296, gi|...
Organism: Oryza sativa Japonica Group
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52076296, gi|....

Description E-value Query
Range
Subject
Range
gi|113594810, gi... - gi|5803261|dbj|BAA83571.1| putative early flowering 3 [Oryza sativa Japonica Group], gi|50948761|ref...
575.0 [0..12] [395..14]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGGGGGGKE VEERGKVMGP LFPRLHVNDA AKGGGPRAPP RNKMALYEQF TVPSHRFSGG  60
   61 GGALASARGS LARSTSAASQ SQVYGCDMPL FEPFNVPSNG PGQSVEKMNS NSVNRQINGS 120
  121 RKDSGMLSTQ PKGIDKYGSG SRAECAPQQR VEKGIKSSSG RKLADDDEFI VPSVFSA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFPQYSTKER AGVQEESTPL VALSPHKSPP AVSKSPTKCY NTVSKNLERI NVSDVKSRGS  60
   61 QKDKETGPAQ TLKNVEVEHF SSFEASKDMF GSKHAKVCPK TGTINDLDEP HLENSEHQAT 120
  121 SRNGSSVKFQ NPPVRRNTIS AKPSPGIENT NGHCNLPQGG LKEAGTKRKR LEAQDNAEKI 180
  181 DDLSDSSVEC ITAWEISPDE IVGAIGAKHF WKARRAIIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle