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View Structure Prediction Details

Protein: gi|113595759, gi...
Organism: Oryza sativa Japonica Group
Length: 263 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113595759, gi....

Description E-value Query
Range
Subject
Range
PDV1_ARATH - Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1 SV=1
322.0 [0..12] [263..11]
gi|125569579, gi... - gi|56784010|dbj|BAD81465.1| unknown protein [Oryza sativa Japonica Group], gi|125569579|gb|EAZ11094....
312.0 [0..9] [263..5]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPASSSSA AGLQERIWDL HDNLSHAILS LSASAHRCCR RRAPEGRVVV KGWRRQGGCG  60
   61 DCGLEQEAAA AATMADARSL HAVRAALEDL EGHLHFL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNIQLCQVAE RDAAIARLQQ SRILLATRLA EHRWKKHEVI EEALAFVDDA LDKSRFVSPE  60
   61 DVRGTHTHSQ S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.845 N/A N/A a.4.5 "Winged helix" DNA-binding domain

Predicted Domain #3
Region A:
Residues: [169-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VENQCPKIHD SNFLVRFLSC TLAIAKNSLR FERIGGALGN TAMFAVSMLA FLQLQQVAFG  60
   61 KQTPAVQCRR VNYFHSQMSV KNTKEKHLVV LLARG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle