YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42568906, gi\|...
Organism:	Arabidopsis thaliana
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568906, gi|....

Description	E-value	Query Range	Subject Range
gi\|50941559, gi\|... - gi\|50941559\|ref\|XP_480307.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|40253874\|d...	326.0	[0..52]	[321..50]
gi\|47221488 - gi\|47221488\|emb\|CAG08150.1\| unnamed protein product [Tetraodon nigroviridis]	301.0	[0..46]	[318..131]
gi\|73995279 - gi\|73995279\|ref\|XP_543416.2\| PREDICTED: similar to F-box only protein 21 isoform 2 [Canis familiaris...	290.0	[0..87]	[328..360]
FBXO21 - F-box protein 21 gi\|168269512 - gi\|168269512\|dbj\|BAG09883.1\| F-box only protein 21 [synthetic construct] gi\|114647176, gi... - gi\|114647178\|ref\|XP_001156074.1\| PREDICTED: F-box only protein 21 isoform 8 [Pan troglodytes], gi\|11...	290.0	[0..87]	[328..336]
gi\|109098894, gi... - gi\|109098896\|ref\|XP_001083230.1\| PREDICTED: similar to F-box only protein 21 isoform 2 isoform 6 [Ma...	290.0	[0..87]	[328..336]
FBX21_PONPY - F-box only protein 21 - Pongo pygmaeus (Orangutan) FBX21_PONAB - F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1	290.0	[0..87]	[328..336]
gi\|109496037 - gi\|109496037\|ref\|XP_341092.3\| PREDICTED: similar to F-box only protein 21 [Rattus norvegicus]	289.0	[0..87]	[328..360]
gi\|76639093 - gi\|76639093\|ref\|XP_610578.2\| PREDICTED: similar to F-box only protein 21 isoform 2 [Bos taurus]	289.0	[0..87]	[328..57]
gi\|26006223 - gi\|26006223\|dbj\|BAC41454.1\| mKIAA0875 protein [Mus musculus]	288.0	[0..87]	[328..341]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSQSLSTL TICGSVKVSS LLRNRLNSVK ASSLIGDRCV SCQFLRKSPS FRSHWKSLKQ  60
   61 RNLLRVEARW PFQGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEQGLDPSSE RSESANEDIL IFFFQLDLAT RVQYAMNLEQ YDIAQQLREK LTEVEEESIR  60
   61 LQEGKRGSSA KSEAQDKGIS IIRLRADLQN AIDSEDYGLA AKLRDEISKL EA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.984	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #3

Region A:
Residues: [188-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLAVSAKAL AFEKAEYAFR LGQKLRHKTF GYRAVVCGMD PICSESSSWM EAAEVEKLPR  60
   61 GSNQPFYQVL VDVRTHPDLL VAYVAEDNLL APEKPDKERF DHPYISFLYY GADTAGDFIP 120
  121 VKQLREKYNR PRHEVPFDSQ DED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1vbvA
Description:	Crystal structure of hypothetical protein from Esherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits