YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42568906, gi\|...
Organism:	Arabidopsis thaliana
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568906, gi|....

Description	E-value	Query Range	Subject Range
gi\|50941559, gi\|... - gi\|50941559\|ref\|XP_480307.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|40253874\|d...	326.0	[0..52]	[321..50]
gi\|47221488 - gi\|47221488\|emb\|CAG08150.1\| unnamed protein product [Tetraodon nigroviridis]	301.0	[0..46]	[318..131]
gi\|73995279 - gi\|73995279\|ref\|XP_543416.2\| PREDICTED: similar to F-box only protein 21 isoform 2 [Canis familiaris...	290.0	[0..87]	[328..360]
FBXO21 - F-box protein 21 gi\|168269512 - gi\|168269512\|dbj\|BAG09883.1\| F-box only protein 21 [synthetic construct] gi\|114647176, gi... - gi\|114647178\|ref\|XP_001156074.1\| PREDICTED: F-box only protein 21 isoform 8 [Pan troglodytes], gi\|11...	290.0	[0..87]	[328..336]
gi\|109098894, gi... - gi\|109098896\|ref\|XP_001083230.1\| PREDICTED: similar to F-box only protein 21 isoform 2 isoform 6 [Ma...	290.0	[0..87]	[328..336]
FBX21_PONPY - F-box only protein 21 - Pongo pygmaeus (Orangutan) FBX21_PONAB - F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1	290.0	[0..87]	[328..336]
gi\|109496037 - gi\|109496037\|ref\|XP_341092.3\| PREDICTED: similar to F-box only protein 21 [Rattus norvegicus]	289.0	[0..87]	[328..360]
gi\|76639093 - gi\|76639093\|ref\|XP_610578.2\| PREDICTED: similar to F-box only protein 21 isoform 2 [Bos taurus]	289.0	[0..87]	[328..57]
gi\|26006223 - gi\|26006223\|dbj\|BAC41454.1\| mKIAA0875 protein [Mus musculus]	288.0	[0..87]	[328..341]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSQSLSTL TICGSVKVSS LLRNRLNSVK ASSLIGDRCV SCQFLRKSPS FRSHWKSLKQ  60
   61 RNLLRVEARW PFQGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.707	a.60.1	SAM/Pointed domain
View	Download	0.707	a.60.1	SAM/Pointed domain
View	Download	0.642	d.58.1	4Fe-4S ferredoxins
View	Download	0.629	a.59.1	PAH2 domain
View	Download	0.599	a.60.1	SAM/Pointed domain
View	Download	0.590	a.60.1	SAM/Pointed domain
View	Download	0.576	a.138.1	Multiheme cytochromes
View	Download	0.567	a.60.1	SAM/Pointed domain
View	Download	0.546	a.60.1	SAM/Pointed domain
View	Download	0.533	d.50.3	PI-Pfui intein middle domain
View	Download	0.431	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.339	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.303	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.278	a.59.1	PAH2 domain

Predicted Domain #2

Region A:
Residues: [76-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEQGLDPSSE RSESANEDIL IFFFQLDLAT RVQYAMNLEQ YDIAQQLREK LTEVEEESIR  60
   61 LQEGKRGSSA KSEAQDKGIS IIRLRADLQN AIDSEDYGLA AKLRDEISKL EA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.984	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.984	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.979	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.960	N/A	N/A	a.24.18	Description not found.
View	Download	0.945	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.945	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.940	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.815	N/A	N/A	a.7.1	Spectrin repeat

Predicted Domain #3

Region A:
Residues: [188-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLAVSAKAL AFEKAEYAFR LGQKLRHKTF GYRAVVCGMD PICSESSSWM EAAEVEKLPR  60
   61 GSNQPFYQVL VDVRTHPDLL VAYVAEDNLL APEKPDKERF DHPYISFLYY GADTAGDFIP 120
  121 VKQLREKYNR PRHEVPFDSQ DED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1vbvA
Description:	Crystal structure of hypothetical protein from Esherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits