YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51970620, gi\|...
Organism:	Arabidopsis thaliana
Length:	784 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51970620, gi|....

Description	E-value	Query Range	Subject Range
gi\|109472909 - gi\|109472909\|ref\|XP_001059617.1\| PREDICTED: similar to nucleolar protein with MIF4G domain 1 [Rattus...	400.0	[0..3]	[783..143]
gi\|58390283, gi\|... - gi\|58390283\|ref\|XP_317618.2\| ENSANGP00000007281 [Anopheles gambiae str. PEST], gi\|55237831\|gb\|EAA122...	397.0	[0..221]	[784..91]
gi\|90304122, gi\|... - gi\|90304122\|gb\|EAS33753.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119189459\|re...	395.0	[0..208]	[784..48]
CWC22_CRYNB - Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A...	395.0	[0..144]	[781..6]
NOM1_MOUSE - Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=2 SV=1	395.0	[0..3]	[783..80]
CWC22_CRYNE - Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans GN=CWC22 PE=3 SV=1 CWC22_CRYNJ - Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 /...	394.0	[0..144]	[781..6]
gi\|110748774 - gi\|110748774\|ref\|XP_001120152.1\| PREDICTED: similar to CG12750-PA [Apis mellifera]	385.0	[0..285]	[784..69]
NOM1 - nucleolar protein with MIF4G domain 1 gi\|189442450 - gi\|189442450\|gb\|AAI67821.1\| Nucleolar protein with MIF4G domain 1 [synthetic construct]	382.0	[0..3]	[783..80]
gi\|50732255 - gi\|50732255\|ref\|XP_418549.1\| PREDICTED: similar to CG9004-PA [Gallus gallus]	376.0	[0..22]	[783..17]
gi\|77548658, gi\|... - gi\|77548658\|gb\|ABA91455.1\| Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica ...	376.0	[0..163]	[784..1]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSRHEKRK EARLQKNQKK HESWLQRHKS EKEKRVSSSA SAQKSGDVIK SEDFRQISDS  60
   61 VTEHMESSSP SGNKDHGKSF IPKKEEVRVK SKEKKMQKVE RIKDLNRPRK KTNFEEFLEM 120
  121 DTPTVISGDQ DAELERRLAK KLKIKKGKLR GMDDGLNDLF EGLPSVLDSM GSELGDSRKK 180
  181 RKKKRSEEKQ DHEDVDELAN EDLEHEESEF SDEESEEEPV GKRDRKRHKK KKKSVDEELE 240
  241 SDLMNITDDG ESETVNYHDS PSSLEKVDTP LH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [273-784]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERKPESSSKY VAPHLRSQAK SESEELTKMR TRIKGLLNKM AESNVETITA ELATIYRSVA  60
   61 RSVSSQIFCE EVLTTYARGN EQYAVFASFI AGMACLVGMD FSAKLIASLA KSFEDEYQKE 120
  121 DSLSLNGISL LLSYLCILGV CSSDLIYDFL MTLGKRLTKV DAFTITTVLD CCGMKIRSDD 180
  181 PLAMKTFIIS IQNKANELKT SSDGQTQMNN MMMEKMLETI SAIKNNKLRA KEDSVQNTRV 240
  241 KKWLQKLRVE EVLLRGLTWS KLLDPEKKGQ WWLSGDLVVD SNTAEDIAET MDAEVVEAQK 300
  301 MLKLAEAQRM NTDSRKAIFC VIMSSEDYID AFEKLLRLDL PGKQDREIMR VLVECCLQEK 360
  361 AFNKFYTVLA SKLCEHDKNH KFTLQYCIWD HFKELESMSL QRSMHLAKFV AEIIVTFNLS 420
  421 LAVLKSVDLA NPVELTPKRI MHFRMLFEAI FEHPENLVWN LFTRIALNPE YEALRDGIKF 480
  481 FVKEYVVKNN KAIYGKFRKA KEALNNAEGL LM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.221849
Match:	1h2tC
Description:	CBP80, 80KDa nuclear cap-binding protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits