YRC Public Data Repository - Protein Structure Prediction

Protein:	TFB2_ARATH
Organism:	Arabidopsis thaliana
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFB2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73972150 - gi\|73972150\|ref\|XP_848919.1\| PREDICTED: similar to general transcription factor II H, polypeptide 4 ...	657.0	[0..1]	[451..10]
gi\|94733612 - gi\|94733612\|emb\|CAK04588.1\| novel protein (zgc:77721) [Danio rerio]	655.0	[0..3]	[451..4]
gi\|114050799, gi... - gi\|55700798\|dbj\|BAD69753.1\| general transcription factor IIH, polypeptide 4, 52kDa [Macaca mulatta],... gi\|60655839, gi\|... - gi\|60655841\|gb\|AAX32484.1\| general transcription factor IIH polypeptide 4 [synthetic construct], gi\|... GTF2H4 - general transcription factor IIH, polypeptide 4, 52kDa TF2H4_PANTR - General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1	654.0	[0..1]	[451..9]
gi\|178056954, gi... - gi\|47496805\|dbj\|BAD08426.2\| general transcription factor IIH, polypeptide 4 [Sus scrofa], gi\|4152916...	653.0	[0..1]	[451..10]
gi\|47059175, gi\|... - gi\|47059175\|ref\|NP_997666.1\| general transcription factor II H, polypeptide 4 [Rattus norvegicus], g...	652.0	[0..1]	[451..10]
TF2H4_MOUSE - General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=1 SV=1	652.0	[0..1]	[451..10]
gi\|155371845, gi... - gi\|61870690\|ref\|XP_613734.1\| PREDICTED: similar to general transcription factor II H, polypeptide 4 ...	650.0	[0..1]	[451..10]
gi\|47939830, gi\|... - gi\|47939830\|gb\|AAH72322.1\| MGC83106 protein [Xenopus laevis], gi\|147899535\|ref\|NP_001085110.1\| hypot...	649.0	[0..1]	[452..3]

Back

Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQVKIIAKN FMDMVASLPA IKLDKLYNNV FICEAILRSL PPLAKKYVLQ MLYIDVPVPA  60
   61 TMMEEWVLAD GTSKHRVAID RLIQLRIFSE ISDRKRGTSY SLNPTFQNNL QKHIISGGVL 120
  121 PREPMNSDNA IKLPSLQELE TYALKQWECF LLQLINSGQG EK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTGISSSMMK IFQRGLLSQR DKDGPRLTES GFQFLLMDTN AQLWYIIREY ILNAEERDVD  60
   61 PADLISFLLE LSFHVTGQAY NLNTLTEVQN NTLKDLADLG LVKLQQGRKD SWFIPTKLAT 120
  121 NLSVSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [289-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADSSARKEGF VVMETNFRMY AYSTSKLQCE ILRLFARIEY QLPNLIACAI TKESLYNAFD  60
   61 NGITSDQIIT FLQQNSHPRC ADRVPSIPEN VTDQIRLWET DLQRIEMTQA HFYDEFPSKD 120
  121 VFEAACDFAR EWRGLLWEDS KRMRLVVKSE VHNQMREFLH TQSR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits